Predicting Disease Spread from Flow Data

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Documentation for package ‘epiflows’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.

Help Pages

add_coordinates	Add/Retrieve location coordinates
as.SpatialLinesDataFrame	Convert to SpatialLinesDataFrame class
as.SpatialLinesDataFrame.epiflows	Convert to SpatialLinesDataFrame class
Brazil_epiflows	Yellow Fever Data from Brazil; 2016-12 to 2017-05
epiflows	epiflows
epiflows.vars	Epiflow Global Variables
estimate_risk_spread	Travel-related disease cases spreaded to other locations from an infectious location
estimate_risk_spread.default	Travel-related disease cases spreaded to other locations from an infectious location
estimate_risk_spread.epiflows	Travel-related disease cases spreaded to other locations from an infectious location
get_coordinates	Add/Retrieve location coordinates
get_coordinates.epiflows	Add/Retrieve location coordinates
get_flows	Access flow data
get_flows.epiflows	Access flow data
get_id	Access population identifiers in epiflows objects
get_locations	Access flow data
get_locations.epiflows	Access flow data
get_n	get the number of cases per flow
get_n.epiflows	get the number of cases per flow
get_pop_size	Get population size for each entry in locations
get_pop_size.epiflows	Get population size for each entry in locations
get_vars	Access location metadata
get_vars.epiflows	Access location metadata
global_vars	Epiflow Global Variables
grid_epiflows	Visualise epidemic flows using a grid
make_epiflows	Create an epiflows object
make_epiflows.data.frame	Create an epiflows object
make_epiflows.integer	Create an epiflows object
make_epiflows.numeric	Create an epiflows object
map_epiflows	Map flows of people between locations
plot.epiflows	Various plots for epiflows objects
print.epiflows	Print method from epiflows objects
set_vars	Access location metadata
set_vars.epiflows	Access location metadata
set_vars<-	Access location metadata
set_vars<-.epiflows	Access location metadata
vis_epiflows	Visualise epidemic flows using visNetwork
YF_Brazil	Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_coordinates	Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_flows	Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_locations	Yellow Fever Data from Brazil; 2016-12 to 2017-05
[.epiflows	Subset 'epiflows' objects