Simulating Diversification Dynamics

[Up] [Top]

Documentation for package ‘paleobuddy’ version 1.0.0

Help Pages

bd.sim General rate Birth-Death simulation
binner Bin occurrences in geologic intervals
co2 Jurassic CO2 data
draw.sim Draw a sim object
find.lineages Separate a paleobuddy simulation into monophyletic clades
head.sim Details, generics, and methods for the 'sim' class
is.sim Details, generics, and methods for the 'sim' class
make.phylo Phylogeny generating
make.rate Create a flexible rate for birth-death or sampling simulations
paleobuddy paleobuddy: Simulating diversification dynamics
phylo.to.sim Converting a phylogeny in a paleobuddy object
plot.sim Details, generics, and methods for the 'sim' class
print.sim Details, generics, and methods for the 'sim' class
rexp.var General rate exponential and Weibull waiting times
sample.clade General rate species sampling
sim Details, generics, and methods for the 'sim' class
sim.counts Details, generics, and methods for the 'sim' class
summary.sim Details, generics, and methods for the 'sim' class
tail.sim Details, generics, and methods for the 'sim' class
temp Cenozoic temperature data
var.rate.div Expected diversity for general exponential rates