Data Visualisation on 'Lifemap' Tree

Documentation for package ‘LifemapR’ version 1.1.4

+.lifemap_obj	Add a graphical element to a tree visualisation.
add_lm_branches	Compute the aesthetics for a subtree visualisation.
add_lm_markers	Compute the aesthetics for markers visualisation.
add_lm_piecharts	Compute the aesthetics for discret values visualisation.
build_Lifemap	A function to construct a LifemapR object, usable by the other functions of the package.
create_matrix	Create a dataframe for the ancestry.
create_value_range	Compute a new scale for a value
display_map	Create a Lifemap base.
display_option	Compute the different display options.
draw_Lifemap	Represent data on a Lifemap basemap.
eukaryotes_1000	NCBI information for 1000 eukaryotes
eukaryotes_80	NCBI information for 80 eukaryotes
gen_res	Genomic results
is.lifemap_obj	Reports whether x is a lifemap_obj object.
is.lm_branches	Reports whether x is a lm_branches object.
is.lm_markers	Reports whether x is a lm_markers object.
is.lm_piecharts	Reports whether x is a lm_branches object.
kraken_res	Kraken results
lifemap	Initialise a new Lifemap visualisation.
lm_branches	Add a "branches" layer to a lifemap_obj object.
LM_eukaryotes	Transformation in a LifemapR format of NCBI information for 1000 eukaryotes
lm_markers	add a "markers" layer to a lifemap_obj object.
lm_piecharts	Add a "piecharts" layer to a lifemap_obj object.
make_newick	Create a newick for the given dataset.
pass_infos	Infer numerical values to nodes.
pass_infos_discret	Infer discret values to nodes for lm_piecharts function.
print.lifemap_obj	Method to print lifemap_obj objects.