The P-Model and BiomeE Modelling Framework

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Documentation for package ‘rsofun’ version 5.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

biomee_gs_leuning_drivers	rsofun BiomeE driver data (Leuning photosynthesis model)
biomee_gs_leuning_output	rsofun BiomeE (gs_leuning) output data
biomee_p_model_drivers	rsofun BiomeE driver data (P-model photosynthesis model)
biomee_p_model_output	rsofun BiomeE (P-model) output data
biomee_validation	rsofun BiomeE targets validation data
calib_sofun	Calibrates SOFUN model parameters
cost_likelihood_biomee	Log-likelihood cost function for BiomeE with different targets
cost_likelihood_pmodel	Cost function computing a log-likelihood for calibration of P-model parameters
cost_rmse_biomee	RMSE cost function for BiomeE
cost_rmse_pmodel	Cost function computing RMSE for calibration of P-model parameters
init_dates_dataframe	Initialises a tibble with dates
p_model_drivers	rsofun P-model driver data
p_model_drivers_vcmax25	rsofun P-model driver data (for leaf traits)
p_model_output	rsofun P-model output data
p_model_output_vcmax25	rsofun P-model output data (using vcmax25 drivers)
p_model_validation	rsofun P-model GPP validation data
p_model_validation_vcmax25	rsofun P-model Vcmax25 validation data
runread_biomee_f	Run BiomeE
runread_pmodel_f	Run the P-model
run_biomee_f_bysite	Run BiomeE (R wrapper)
run_pmodel_f_bysite	R wrapper for SOFUN P-model