Package: AMDconfigurations
Type: Package
Title: Geometric Analysis of Configurations in High-Dimensional Spaces
Version: 0.2.1
Authors@R: person("Manuel", "Mendoza", role = c("aut", "cre"),
  email = "mmendoza@mncn.csic.es",
  comment = c(ORCID = "0000-0002-2143-8138"))
Description: Computes Average Membership Degree (AMD) from soft-membership
    matrices and constructs AMD curves across candidate configuration counts.
    The current curve backend uses repeated fuzzy c-means fits while keeping
    the AMD definition, membership estimation, curve construction, and final
    assignment as separate operations. Fitted memberships, convergence
    diagnostics, preprocessing transformations, seeds, row maps, and
    process-level reproducibility links are retained. The package reports
    numerical curve features but leaves their scientific interpretation to an
    explicitly justified analysis. The method was introduced by Mendoza and
    Araújo (2022) <doi:10.1111/ecog.06289>.
License: MIT + file LICENSE
URL: https://github.com/mmendoza1967/AMDconfigurations,
        https://mmendoza1967.github.io/AMDconfigurations/
BugReports: https://github.com/mmendoza1967/AMDconfigurations/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.1)
Imports: e1071 (>= 1.7-17), grDevices, graphics, stats, utils
Suggests: testthat (>= 3.2.0), knitr, rmarkdown, ranger (>= 0.18.0),
        digest (>= 0.6.27)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/Needs/website: pkgdown
NeedsCompilation: no
Packaged: 2026-10-12 16:17:12 UTC; runner
Author: Manuel Mendoza [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2143-8138>)
Maintainer: Manuel Mendoza <mmendoza@mncn.csic.es>
Repository: CRAN
Date/Publication: 2026-10-12 19:10:46 UTC
Built: R 4.5.2; ; 2026-10-12 19:56:53 UTC; unix
