Geometric Analysis of Configurations in High-Dimensional Spaces

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Documentation for package ‘AMDconfigurations’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

amd_reproducibility_manifest	Record the reproducibility environment for an AMD process
amd_score	Compute Average Membership Degree from soft memberships
assign_configurations	Assign observations to a user-selected number of configurations
compute_amd_curve	Compute an Average Membership Degree (AMD) curve
diagnose_amd	Describe an AMD curve and its stored partitions
Fulldata	Ecological dataset used in the example
load_amd_predictor	Load the optional corrected AMD reader
plot.amd_curve	Plot method for AMD curve objects
plot.amd_prediction	Plot an optional AMD reader result
plot_AMD	Plot an AMD curve
predict_amd	Propose a modal resolution from an AMD analysis
print.amd_curve	Print an AMD curve object
print.amd_diagnostics	Print descriptive AMD diagnostics
print.amd_prediction	Print an optional AMD reader result
summary.amd_curve	Summarise an AMD curve object
summary.amd_prediction	Summarise an optional AMD reader result
Transcdata_small	Reduced transcriptomic dataset (1000 variables)