Analyzing and Visualizing Multidimensional Plant Traits

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Documentation for package ‘MultiTraits’ version 1.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

average_interlayer_clustering_coefficient	Average Interlayer Clustering Coefficient for Plant Trait Multilayer Networks
average_interlayer_path_length	Calculate Average Interlayer Path Length (AIPL) for Plant Trait Multilayer Networks
crosslayer_module_assoc	Calculate Module Interlayer Association (MIA) for Plant Trait Multilayer Networks
cross_layer_groups	Identify Cross-Layer Modules in Plant Trait Multilayer Networks
CSR	Classify Plant Strategies using Pierce et al. (2017) CSR Method
CSR_hodgson	Classify Plant Strategies using Hodgson et al. (1999) CSR Method
CSR_plot	Create a Ternary Plot for CSR Plant Ecological Strategies
forest_invader_traits	Forest Woody Invader Functional Traits Dataset
forest_invader_tree	Phylogenetic tree for forest invader trait analysis
interlayer_closeness	Calculate Interlayer Closeness for Plant Trait Multilayer Network Nodes
interlayer_clustering_coefficient	Calculate Interlayer Clustering Coefficient for Plant Trait Multilayer Networks (PTMNs)
interlayer_degree	Calculate Interlayer Degree for Nodes in Plant Trait Multilayer Networks
interlayer_edge_density	Calculate Interlayer Edge Density for Plant Trait Multilayer Networks
LHS	Calculate LHS (Leaf-Height-Seed) Plant Ecological Strategy Classification
LHS_plot	Create 3D Scatter Plot for LHS Plant Ecological Strategy Data
LHS_strategy_scheme	Create a table of Leaf-Height-Seed (LHS) strategy types
NPT_continuous	Continuous Niche Classification Based on Periodic Table of Niches
NPT_continuous_plot	Plot Continuous Niche Classification Results
NPT_discrete	Discrete Niche Classification Based on Periodic Table of Niches
NPT_discrete_plot	Visualize Discrete Niche Classification Tree
PFF	Plant Functional Traits Dataset from Ponderosa Pine Forests Flora (PFF)
PFF_tree	Phylogenetic Tree of 133 Plant Species from Pine Forest Flora
phylo_correlation	Phylogenetically Corrected Correlation Analysis
PTMN	Plant Trait Multilayer Network Analysis
PTMN_metrics	Calculate Plant Trait Multilayer Network (PTMN) Metrics
PTMN_plot	Plot Plant Trait Multilayer Networks (PTMN)
PTN	Generate Plant Trait Network
PTN_corr	Calculate and Visualize Plant Trait Correlation Network
PTN_metrics	Calculate Node and Global Metrics for Trait Networks
PTN_plot	Plot Trait Network Graph