# General Effect Modelling

## Documentation for package ‘gemR’ version 1.2.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

coef.GEMglmnet | Elastic-net modeling of GEM objects.
confints | Confidence Intervals of Effect Differences
confints.default | Confidence Intervals of Effect Differences
confints.GEM | Confidence Intervals of Effect Differences
corrplot | Plot function and extraction method for GEM-based PLS
Diabetes | Diabetes data
elastic | Elastic-net modeling of GEM objects.
elastic.GEM | Elastic-net modeling of GEM objects.
explvar | Plot function and extraction method for GEM-based PLS
explvar.GEMpls | Plot function and extraction method for GEM-based PLS
GEM | General Effect Modelling
gemR | General Effect Modelling
knock.in | Knock-in and knock-out of effect(s)
knock.out | Knock-in and knock-out of effect(s)
Lactobacillus | Lactobacillus data
loadingplot | Plot function and extraction method for GEM-based PLS
loadings | Plot function and extraction method for GEM-based PLS
MS | Multiple Sclerosis data
mvrValstats | Plot function and extraction method for GEM-based PLS
neuralnet | Neural Network by Multilayer Perceptron
pca | Principal Component Analysis
plot.confints | Confidence Intervals of Effect Differences
plot.GEM | General Effect Modelling
plot.GEM.pls | Plot function and extraction method for GEM-based PLS
plot.GEMpls | Plot function and extraction method for GEM-based PLS
pls.GEM | Partial Least Squares modelling of GEM objects.
print.GEM | General Effect Modelling
print.GEMpls | Plot function and extraction method for GEM-based PLS
print.summary.GEM | General Effect Modelling
R2 | Plot function and extraction method for GEM-based PLS
sca | Simultaneous Component Analysis
scoreplot | Plot function and extraction method for GEM-based PLS
scores | Plot function and extraction method for GEM-based PLS
summary.GEM | General Effect Modelling
summary.GEMpls | Plot function and extraction method for GEM-based PLS
tableGEM | General Effect Modelling