motmot-package	motmot-package
addFossilToPhy	addFossilToPhy
allopatric.data	allopatric.data
anolis.data	anolis.data
anolis.tree	anolis.tree
as.rateData	as.rateData
as.rateMatrix	as.rateMatrix
blomberg.k	blomberg.k
calcCutOff	calcCutOff
chr.disp.lrt	chr.disp.lrt
chr.disp.param	chr.disp.param
chr.disp.sim	chr.disp.sim
contemporaryPhy	contemporaryPhy
dropTipPartial	dropTipPartial
fairProportions	fairProportions
finch.data	finch.data
finch.tree	finch.tree
likRatePhylo	likRatePhylo
likTraitPhylo	likTraitPhylo
mcmc.plot	mcmc.plot
ML.RatePhylo	ML.RatePhylo
motmot	motmot-package
node.descendents	node.descendents
nodeTimes	nodeTimes
optim.likRatePhylo	optim.likRatePhylo
phyloCovar	phyloCovar
phyloMean	phyloMean
phyloVar	phyloVar
pic.pgls	pic.pgls
plot.timeSlice.ML	plot.timeSlice.ML
plot.traitMedusa.model	plot.traitMedusa.model
RatePhylo.allCI	RatePhylo.allCI
sampleShid	sampleShid
sortTraitData	sortTraitData
summary.traitMedusa	summary.traitMedusa
sympatric.data	sympatric.data
traitData.plot	traitData.plot
transformPhylo	transformPhylo
transformPhylo.ll	transformPhylo.ll
transformPhylo.MCMC	transformPhylo.MCMC
transformPhylo.ML	transformPhylo.ML
transformPhylo.sim	transformPhylo.sim
transformRateMatrix	transformRateMatrix
