Performing Comprehensive Overlap Assessments

Documentation for package ‘LISTO’ version 0.7.3

buildSeuratMarkerList	Build a Seurat marker list ready to be used by LISTO
factorialPrimePowers	Generate the prime factor decomposition of n factorial.
mtCorrectDF	Perform multiple testing correction on a data frame column
mtCorrectV	Perform multiple testing correction on a vector of p-values
probCounts2MN	Compute the probability that two subsets of sets M and N intersect in k points
probCounts3N	Compute the probability that three subsets of given sizes intersect in k points
pvalCounts2MN	Compute the probability that two subsets of sets M and N intersect in at least k points
pvalCounts3N	Compute the probability that three subsets of a set intersect in at least k points
pvalObjects	Assess the overlap of two or three objects
pvalSets2MN	Compute the p-value of intersection of two subsets of sets M and N
pvalSets2N	Calculate the p-value of intersection for two sets
pvalSets3N	Compute the p-value of intersection of three subsets
runLISTO	Assess the overlap of two or three lists of objects.
vChoose	Compute the prime factor decomposition of the binomial coefficient
vSum	Add numeric vectors of different lenghts