Analysis of Microbial Social Behavior in Bacterial Consortia
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Documentation for package ‘bsocialv2’ version 0.2.1
Help Pages
| analyze_biofilm_sequence | Analyze Biofilm Assembly Sequences |
| analyze_biofilm_sequence-method | Analyze Biofilm Assembly Sequences |
| analyze_diversity | Analyze Diversity Effect on Fitness |
| analyze_diversity-method | Analyze Diversity Effect on Fitness |
| analyze_growth | Analyze Growth Metrics |
| analyze_growth-method | Analyze Growth Metrics |
| analyze_social_behavior | Analyze Social Behavior (Fitness Effects) |
| analyze_social_behavior-method | Analyze Social Behavior (Fitness Effects) |
| analyze_stability | Analyze Consortium Stability |
| analyze_stability-method | Analyze Consortium Stability |
| bsocial-class | S4 Class for Microbial Social Behavior Analysis |
| calculate_growth_params | Calculate Growth Parameters from Preprocessed Curves |
| calculate_growth_params-method | Calculate Growth Parameters from Preprocessed Curves |
| plot_growth_scatter | Plot Growth Scatter (LogPhase vs NGen) |
| plot_growth_scatter-method | Plot Growth Scatter (LogPhase vs NGen) |
| plot_processed_curves | Plot Preprocessed Growth Curves |
| plot_processed_curves-method | Plot Preprocessed Growth Curves |
| summarize_social_behavior | Classify Strains as Cooperators, Cheaters, or Neutrals |
| summarize_social_behavior-method | Classify Strains as Cooperators, Cheaters, or Neutrals |
| transform_curated_data | Import Pre-processed (Curated) Data |
| transform_curated_data-method | Import Pre-processed (Curated) Data |
| transform_raw_data | Preprocess Raw Plate Reader Data |
| transform_raw_data-method | Preprocess Raw Plate Reader Data |