Analysing 'SNP' Data to Support Captive Breeding
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘dartR.captive’ version 1.2.2
Help Pages
| gl.assign.grm | Population assignment using grm |
| gl.assign.mahal | Calculate probabilities of assignment of an individual of unknown provenance to population based on Mahalanobis Distance |
| gl.assign.mahalanobis | Calculate probabilities of assignment of an individual of unknown provenance to population based on Mahalanobis Distance |
| gl.assign.on.genotype | Use genotype to identify populations as possible source populations for an individual of unknown provenance. |
| gl.assign.pa | Use private alleles to identify populations as possible source populations for an individual of unknown provenance. |
| gl.assign.pca | Eliminate from consideration putative source populations for a specified individual of unknown provenance using PCA |
| gl.diagnostics.relatedness | Run simulations and relatedness analyses on genlight objects |
| gl.filter.parent.offspring | Filters putative parent offspring within a population |
| gl.grm | Calculates an identity by descent matrix |
| gl.grm.network | Represents a similarity matrix as a network |
| gl.plot.network | Represents a distance or dissimilarity matrix as a network |
| gl.report.parent.offspring | Identifies putative parent offspring within a population |
| gl.run.colony | Run COLONY2 |
| gl.run.EMIBD9 | Run program EMIBD9 |
| gl.sim.relatedness | Simulate relatedness estimates. |
| gl2colony | Export a COLONY2 input file from a genlight object |
| utils.assignment | Population assignment probabilities |
| utils.assignment_2 | Population assignment probabilities |
| utils.assignment_3 | Population assignment probabilities |
| utils.assignment_4 | Population assignment probabilities |