Efficient Modelling of Resource Competition

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Documentation for package ‘rescomp’ version 1.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package README

Help Pages

apply_event	Applies a 'rescomp_event' object to modify state variables
crmatrix	Shorthand to create a matrix with 'spnum' rows and 'resnum' columns
def_cr_ode	Define consumer resource ODE function
event_batch_transfer	Define an event in which the species and resources are diluted by addition of new medium
event_res_add	Define an event in which a constant amount of some resources is added to (or removed from) the system
event_res_custom	Define an event which instantaneously changes resource concentrations using an arbitrary function
event_res_mult	Define an event in which the resource populations are multiplied by some factor
event_schedule_fixed	Define a schedule of an event occurring at a fixed set of times
event_schedule_periodic	Define a schedule of an event occurring repeatedly at a fixed period
event_set_introseq	Define a schedule of one-off species introductions: one for each species.
event_sp_add	Define an event in which a constant amount of some consumers is added to (or removed from) the system
event_sp_custom	Define an event which instantaneously changes species concentrations using an arbitrary function
event_sp_mult	Define an event in which the consumer populations are multiplied by some factor
frame_and_name	Convert object of class deSolve to a data frame and name columns
funcresp_custom	Define a functional response using an arbitrary function
funcresp_hill	Define a Hill functional response
funcresp_monod	Define a Monod functional response
funcresp_type1	Define a linear functional response
funcresp_type2	Define a Holling type 2 functional response
funcresp_type3	Define a Holling type 3 functional response
get_coefs	Get coefficients from a vector/matrix or 'rescomp_coefs_vector'/'rescomp_coefs_matrix' object
get_coefs_matrix	Get coefficients from a vector/matrix or 'rescomp_coefs_vector'/'rescomp_coefs_matrix' object
get_coefs_vector	Get coefficients from a vector/matrix or 'rescomp_coefs_vector'/'rescomp_coefs_matrix' object
get_event_times	Gets the list of times from a 'rescomp_event_schedule' object
get_funcresp	Get growth rates from a 'rescomp_funcresp' object
get_params	Get params at an instant in time from a 'rescomp_param' object
get_ressupply	Get resource supply rates from a 'rescomp_ressupply' object
plot_funcresp	Plot functional responses
plot_rescomp	Plot consumer and resource dynamics from deSolve output
rescomp_coefs_lerp	Create a set of coefficients by linear interpolation
rescomp_coefs_matrix_custom	Create a matrix of coefficients using an arbitrary function
rescomp_coefs_vector_custom	Create a vector of coefficients using an arbitrary function
rescomp_param_custom	Create a rescomp parameter using an arbitrary function
rescomp_param_sine	Create a rescomp parameter using a sine/square/triangle wave
rescomp_param_square	Create a rescomp parameter using a sine/square/triangle wave
rescomp_param_triangle	Create a rescomp parameter using a sine/square/triangle wave
ressupply_chemostat	Create a resource supply rate using chemostat dynamics
ressupply_constant	Create a resource supply rate using a constant rate resource supply
ressupply_custom	Create a resource supply rate using an arbitrary function
ressupply_logistic	Create a resource supply rate using logistic resource growth
sim_rescomp	Simulate resource competition (a convenience wrapper for 'deSolve::ode()')
spec_rescomp	Generate list of parameters for a consumer-resource model to be passed to 'sim_rescomp()'