Bayesian Dynamic Energy Budget Modelling

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Documentation for package ‘BayesianDEB’ version 0.1.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

arrhenius	Arrhenius Temperature Correction
bdeb_data	Prepare Data for BDEB Models
bdeb_derived	Compute Derived Biological Quantities from the Posterior
bdeb_diagnose	MCMC Convergence Diagnostics
bdeb_ec50	Extract EC50 and NEC from a DEBtox Fit
bdeb_fit	Fit a BDEB Model via Hamiltonian Monte Carlo
bdeb_loo	LOO Cross-Validation for Model Comparison
bdeb_model	Specify a BDEB Model
bdeb_plots	Plot Methods for BDEB Objects
bdeb_ppc	Posterior Predictive Checks for BDEB Models
bdeb_predict	Predict from a BDEB Fit
bdeb_prior_predictive	Prior Predictive Check
bdeb_session_info	Reproducibility Report
bdeb_summary	Posterior Summary for BDEB Parameters
bdeb_tox	DEBtox Model Specification
coef.bdeb_fit	Extract Point Estimates from a BDEB Fit
debtox_growth	Simulated DEBtox Growth Data
debtox_simulate	Simulate DEBtox Growth Under Toxicant Exposure
deb_fluxes	Compute DEB Energy Fluxes
deb_simulate	Simulate DEB Growth Trajectory
eisenia_cd	Eisenia andrei Cadmium Toxicity Data (Van Gestel 1991)
eisenia_growth	Simulated Eisenia fetida Growth Data
eisenia_neuhauser	Eisenia fetida Growth Data (Neuhauser 1980)
folsomia_repro	Simulated Folsomia candida Reproduction Data
observation_models	Observation Model Specifications
obs_lognormal	Observation Model Specifications
obs_negbinom	Observation Model Specifications
obs_normal	Observation Model Specifications
obs_poisson	Observation Model Specifications
obs_student_t	Observation Model Specifications
plot.bdeb_fit	Plot a BDEB Fit
plot.bdeb_ppc	Plot Posterior Predictive Checks
plot_dose_response	Plot DEBtox Dose-Response
predict.bdeb_fit	Predict from a BDEB Fit
priors	Prior Distribution Specifications for BDEB Models
prior_beta	Prior Distribution Specifications for BDEB Models
prior_default	Default Priors for DEB Parameters
prior_exponential	Prior Distribution Specifications for BDEB Models
prior_halfcauchy	Prior Distribution Specifications for BDEB Models
prior_halfnormal	Prior Distribution Specifications for BDEB Models
prior_lognormal	Prior Distribution Specifications for BDEB Models
prior_normal	Prior Distribution Specifications for BDEB Models
prior_species	Species-Specific Priors from the AmP Collection
repro_to_intervals	Convert Cumulative Reproduction to Intervals