'DuckDB' High Throughput Sequencing File Formats Reader Extension

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Documentation for package ‘Rduckhts’ version 1.1.6-0.0.2

• DESCRIPTION file.
• Package NEWS.

Help Pages

detect_complex_types	Detect Complex Types in DuckDB Table
duckdb_type_mappings	DuckDB to R Type Mappings
duckhts_bootstrap	Bootstrap the duckhts extension sources into the R package
duckhts_build	Build the duckhts DuckDB extension
duckhts_load	Load the duckhts extension into a DuckDB connection
extract_array_element	Extract Array Elements Safely
extract_map_data	Extract MAP Keys and Values
normalize_tabix_types	Normalize R Data Types to DuckDB Types for Tabix
rduckhts_bam	Create SAM/BAM/CRAM Table
rduckhts_bam_index	Build BAM or CRAM Index
rduckhts_bcf	Create VCF/BCF Table
rduckhts_bcf_index	Build VCF or BCF Index
rduckhts_bed	Create BED Table
rduckhts_bgunzip	BGZF Decompress a File
rduckhts_bgzip	BGZF Compress a File
rduckhts_detect_quality_encoding	Detect FASTQ Quality Encoding
rduckhts_fasta	Create FASTA Table
rduckhts_fasta_index	Build FASTA Index
rduckhts_fasta_nuc	Compute FASTA Interval Nucleotide Composition
rduckhts_fastq	Create FASTQ Table
rduckhts_functions	List DuckHTS Extension Functions
rduckhts_gff	Create GFF3 Table
rduckhts_gtf	Create GTF Table
rduckhts_hts_header	Read HTS Header Metadata
rduckhts_hts_index	Read HTS Index Metadata
rduckhts_hts_index_raw	Read Raw HTS Index Blob
rduckhts_hts_index_spans	Read HTS Index Spans
rduckhts_liftover	Lift Over Variant Coordinates Against a Query
rduckhts_load	Load DuckHTS Extension
rduckhts_munge	Munge Summary Statistics Rows
rduckhts_score	Compute Polygenic Scores
rduckhts_tabix	Create Tabix-Indexed File Table
rduckhts_tabix_index	Build Tabix Index
setup_hts_env	Setup HTSlib Environment