Global Livestock Environmental Assessment Model (GLEAM-X)


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Documentation for package ‘gleam’ version 0.8.0

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assign_allocation_shares Assign allocation shares to emission variables by commodity
calc_allocated_emissions Calculate allocated greenhouse gas emissions (GHG)
calc_allocation_shares Calculate allocation shares for livestock commodities
calc_avg_weights Calculate average and final live weights by cohort
calc_ch4_enteric Calculate daily enteric methane emissions
calc_ch4_manure Calculate methane (CH4) emissions from manure management systems
calc_ch4_ration_rice Calculate a ration component's contribution to methane (CH4) emissions from rice cultivation
calc_co2eq Convert methane (CH4) and nitrous oxide (N2O) emissions to CO2-equivalents (CO2eq) using Global Warming Potentials (GWP) factors
calc_co2_ration_crop_activities Calculate a ration component's contribution to carbon dioxide (CO2) emissions from on-field agricultural activities
calc_co2_ration_fertilizer Calculate a ration component's contribution to carbon dioxide (CO2) emissions from fertilizer manufacture
calc_co2_ration_luc_nopeat Calculate a ration component's contribution to carbon dioxide (CO2) emissions from land-use change (excluding peatland drainage)
calc_co2_ration_luc_peat Calculate a ration component's contribution to carbon dioxide (CO2) emissions from peatland drainage
calc_co2_ration_pesticides Calculate a ration component's contribution to carbon dioxide (CO2) emissions from pesticide manufacture
calc_cohort_totals Calculate totals by cohort
calc_cohort_to_herd_aggregation Aggregate cohort-level to herd-level data
calc_cohort_weights Calculate live weights by cohort and life stage
calc_conversion_factor_ym Calculate methane conversion factor (ym)
calc_daily_weight_gain Calculate daily weight gain by cohort
calc_fecundity_rates Calculate daily fecundity rates
calc_feed_digestibility_fraction Calculate feed digestibility fraction
calc_fibre_allocation_energy Calculate fibre energy requirements (for biophysical allocation)
calc_fibre_production Calculate fibre production
calc_meat_allocation_energy Calculate meat energy requirements (for biophysical allocation)
calc_meat_production Calculate meat production
calc_metabolic_energy_req_activity Calculate metabolic energy requirements for activity
calc_metabolic_energy_req_fibre Calculate metabolic energy requirements for fibre production
calc_metabolic_energy_req_growth Calculate metabolic energy requirements for growth
calc_metabolic_energy_req_lactation Calculate metabolic energy requirements for lactation
calc_metabolic_energy_req_maintenance Calculate metabolic energy requirements for maintenance
calc_metabolic_energy_req_pregnancy Calculate metabolic energy requirements for pregnancy
calc_metabolic_energy_req_work Calculate metabolic energy requirements for work
calc_milk_allocation_energy Calculate milk energy requirements (for biophysical allocation)
calc_milk_production Calculate milk production
calc_n2o_manure_direct Calculate direct Nitrous Oxide (N2O) emissions from manure management systems
calc_n2o_manure_leaching Calculate indirect Nitrous Oxide (N2O) emissions from manure leaching and runoff
calc_n2o_manure_total Calculate total Nitrous Oxide (N2O) emissions from manure
calc_n2o_manure_volatilization Calculate indirect Nitrous Oxide (N2O) emissions from manure volatilization
calc_n2o_ration_crop_residues Calculate a ration component's contribution to nitrous oxide (N2O) emissions from crop residues decomposition
calc_n2o_ration_fertilizer Calculate a ration component's contribution to nitrous oxide (N2O) emissions from fertilizer use
calc_n2o_ration_manure Calculate a ration component's contribution to nitrous oxide (N2O) emissions from manure application and deposition
calc_nitrogen_excretion Calculate daily nitrogen excretion
calc_nitrogen_intake Calculate daily nitrogen intake
calc_nitrogen_retention Calculate daily nitrogen retention
calc_projected_population_size Calculate one year of steady-state population dynamics
calc_ration_ash Calculate diet ash contribution for a ration component
calc_ration_digestibility Calculate diet digestibility contribution for a ration component
calc_ration_gross_energy Calculate diet gross energy contribution for a ration component
calc_ration_intake Calculate daily ration intake in dry matter
calc_ration_metabolizable_energy Calculate diet metabolizable energy contribution for a ration component
calc_ration_nitrogen_content Calculate diet nitrogen contribution for a ration component
calc_ration_urinary_energy_fraction Calculate urinary energy fraction contribution for a ration component
calc_reg_growth Calculate the ratio of net energy available for growth in the diet (REG – Net Energy for Growth / Digestible Energy)
calc_rem_maintenance Calculate ratio of net energy available for maintenance in the diet (REM - Net Energy for Maintenance / Digestible Energy)
calc_steady_state_structure Calculate steady-state population structure
calc_summary_offtake Summarise offtake and stock Variation for a steady-state year
calc_total_metabolic_energy_req Calculate total metabolic energy requirements
calc_transition_probabilities Calculate transition probabilities for sex-age classes
calc_volatile_solids Calculate Volatile Solids (VS)
calc_work_allocation_energy Calculate work energy requirements (for biophysical allocation)
run_aggregation_module Run Aggregation Module Pipeline
run_allocation_module Run Allocation Module Pipeline
run_demographic_herd_module Run Demographic Herd Module Pipeline
run_emissions_enteric_module Run Enteric Methane (CH4) Emissions Module Pipeline
run_emissions_manure_module Run Emissions from Manure Module Pipeline
run_emissions_ration_module Run Emissions from Feed Production Module Pipeline
run_gleam Run the full Global Livestock Environmental Assessment Model (GLEAM) Pipeline
run_metabolic_energy_req_module Run Metabolic Energy Requirements and Dry Matter Intake Module Pipeline
run_nitrogen_balance_module Run Nitrogen Balance Module Pipeline
run_production_module Run Production Module Pipeline
run_ration_quality_module Run Ration Quality Module Pipeline
run_weights_module Run Weights Module Pipeline