Reconstructing Antibody Dynamics to Estimate the Risk of
Influenza Virus Infection
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Documentation for package ‘seroreconstruct’ version 1.1.5
Help Pages
| flu_activity | Example of flu activity data |
| inputdata | Example of input data |
| output_model_estimate | Extract the model estimates from the fitted MCMC |
| para1 | Example of parameter vector for the main model |
| para2 | Example of parameter vector for the baseline HAI titer for the main model |
| plot_boosting | Plot posterior boosting distributions |
| plot_diagnostics | MCMC diagnostic plots |
| plot_infection_prob | Plot infection probabilities (forest plot) |
| plot_trajectory | Plot antibody trajectory with model fit |
| plot_waning | Plot posterior waning curves |
| print.seroreconstruct_fit | Print method for seroreconstruct_fit |
| print.seroreconstruct_joint | Print method for seroreconstruct_joint |
| print.seroreconstruct_multi | Print method for seroreconstruct_multi |
| print.summary.seroreconstruct_fit | Print method for summary.seroreconstruct_fit |
| print.summary.seroreconstruct_joint | Print method for summary.seroreconstruct_joint |
| print.summary.seroreconstruct_multi | Print method for summary.seroreconstruct_multi |
| sero_reconstruct | Run the MCMC for the Bayesian model |
| simulate_data | Simulation of the dataset of the Bayesian model |
| summary.seroreconstruct_fit | Summary method for seroreconstruct_fit |
| summary.seroreconstruct_joint | Summary method for seroreconstruct_joint |
| summary.seroreconstruct_multi | Summary method for seroreconstruct_multi |
| table_infections | Per-individual infection estimates |
| table_parameters | Summary table of model parameters with credible intervals |
| [[.seroreconstruct_multi | Subset a seroreconstruct_multi object |