Health Geography Toolbox for Model-Based Analysis of Infections Panel Data

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Documentation for package ‘swash’ version 2.0.0

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A B C D E G H I L M N O P Q R S T

swash-package swash: Health Geography Toolbox for Model-Based Analysis of Infections Panel Data

-- A --

as_balanced Correction of Non-balanced Panel Dataset with Regional Infection Data

-- B --

binary_metrics Fit metrics of observed and expected binary variables
binary_metrics_glm Fit metrics for binary logit model
breaksgrowth-class Class '"breaksgrowth"'
breaks_growth Time Series Model with Breakpoints

-- C --

C19dNUTSdata Regional cumulative COVID-19 deaths
calculate_cum Cumulative Infection Numbers
calculate_cum-method Methods for Function 'calculate_cum'
calculate_cum-methods Methods for Function 'calculate_cum'
calculate_incidence Incidence from Infection Numbers
calculate_incidence-method Methods for Function 'calculate_incidence'
calculate_incidence-methods Methods for Function 'calculate_incidence'
calculate_rollmean Rolling Means of Infection Numbers
calculate_rollmean-method Methods for Function 'calculate_rollmean'
calculate_rollmean-methods Methods for Function 'calculate_rollmean'
calculate_rollsum Rolling Sums of Infection Numbers
calculate_rollsum-method Methods for Function 'calculate_rollsum'
calculate_rollsum-methods Methods for Function 'calculate_rollsum'
calculate_Rt Effective Reproduction Number
calculate_Rt-method Methods for Function 'calculate_Rt'
calculate_Rt-methods Methods for Function 'calculate_Rt'
compare_countries Two-country Comparison of Swash-Backwash Model Parameters
confint-method Class '"sbm"'
confint-methods Methods for Function 'confint'
countries-class Class '"countries"'
COVID19Cases_geoRegion Switzerland Daily COVID-19 cases by region

-- D --

did_fatalities_splm_coef Results from a Difference-in-Differences Model

-- E --

expgrowth-class Class '"expgrowth"'
exponential_growth Exponential Growth Model for Epidemic Data

-- G --

growth Logistic Growth Models for Regional Infections
growth-method Methods for Function 'growth'
growth-methods Methods for Function 'growth'
growthmodels-class Class '"growthmodels"'
growth_breaks Time Series Model with Breakpoints for Regional Infections
growth_breaks-method Methods for Function 'growth_breaks'
growth_breaks-methods Methods for Function 'growth_breaks'
growth_hawkes Hawkes Processs models for Regional Infections
growth_hawkes-method Methods for Function 'growth_hawkes'
growth_hawkes-methods Methods for Function 'growth_hawkes'
growth_initial Exponential Growth Models for Regional Infections
growth_initial-method Methods for Function 'growth_initial'
growth_initial-methods Methods for Function 'growth_initial'

-- H --

hawkes-class Class '"hawkes"'
hawkes_growth Hawkes Process Model for Epidemic Data
hist_ci Creating Histograms with Confidence Intervals

-- I --

Infections Infections
infpan-class Class '"infpan"'
is_balanced Test whether Panel Dataset with Regional Infection Data is Balanced

-- L --

load_infections_paneldata Import of infections panel data
loggrowth-class Class '"loggrowth"'
logistic_growth Logistic Growth Model for Epidemic Data

-- M --

metrics Fit metrics of observed and expected numeric variables

-- N --

nbmatrix Construct Neighbourhood Matrix from Polygons
nbstat Calculate Neighbourhood Statistics from Polygons

-- O --

Oesterreich_Faelle Austria Daily COVID-19 cases by region 2020-02-26 to 2020-05-31

-- P --

plot Methods for Function 'plot'
plot-method Class '"breaksgrowth"'
plot-method Class '"countries"'
plot-method Class '"hawkes"'
plot-method Class '"infpan"'
plot-method Class '"loggrowth"'
plot-method Methods for Function 'plot'
plot-method Class '"sbm"'
plot-method Class '"sbm_ci"'
plot_coef_ci Plot Point Estimates With Confidence Intervals
print-method Class '"breaksgrowth"'
print-method Class '"countries"'
print-method Class '"expgrowth"'
print-method Class '"growthmodels"'
print-method Class '"hawkes"'
print-method Class '"infpan"'
print-method Class '"loggrowth"'
print-method Class '"sbm"'
print-method Class '"sbm_ci"'
print-methods Methods for Function 'print'

-- Q --

quantile_ci Computing Quantiles for a given Numeric Vector

-- R --

RKI_Corona_counties German Counties with COVID-19 Cases
R_t Effective Reproduction Number for Epidemic Data

-- S --

sbm-class Class '"sbm"'
sbm_ci-class Class '"sbm_ci"'
show-method Class '"breaksgrowth"'
show-method Class '"countries"'
show-method Class '"expgrowth"'
show-method Class '"growthmodels"'
show-method Class '"hawkes"'
show-method Class '"infpan"'
show-method Class '"loggrowth"'
show-method Class '"sbm"'
show-method Class '"sbm_ci"'
show-methods Methods for Function 'show'
summary-method Class '"breaksgrowth"'
summary-method Class '"countries"'
summary-method Class '"expgrowth"'
summary-method Class '"growthmodels"'
summary-method Class '"hawkes"'
summary-method Class '"infpan"'
summary-method Class '"loggrowth"'
summary-method Class '"sbm"'
summary-method Class '"sbm_ci"'
summary-methods Methods for Function 'summary'
swash Swash-Backwash Model for the Single Epidemic Wave
swash-method Class '"infpan"'
swash-method Methods for Function 'swash'
swash-methods Methods for Function 'swash'
swash_backwash Swash-Backwash Model for the Single Epidemic Wave

-- T --

timestamps Show timestamps
timestamps-method Show timestamps