Applying Partitioning Around Medoids to Single Cell Data with
High Number of Cells
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Documentation for package ‘scellpam’ version 1.4.7
Help Pages
| ApplyPAM | ApplyPAM |
| BuildAbundanceMatrix | BuildAbundanceMatrix |
| CalcAndWriteDissimilarityMatrix | CalcAndWriteDissimilarityMatrix |
| CalculateSilhouette | CalculateSilhouette |
| ClassifAsDataFrame | ClassifAsDataFrame |
| ClosestCases | ClosestCases |
| CsvToJMat | CsvToJMat |
| dgCMatToJMat | dgCMatToJMat |
| ExtractAndWriteDissimilarityMatrix | ExtractAndWriteDissimilarityMatrix |
| FilterBySilhouetteQuantile | FilterBySilhouetteQuantile |
| FilterBySilhouetteThreshold | FilterBySilhouetteThreshold |
| FilterJMatByName | FilterJMatByName |
| GetJCol | GetJCol |
| GetJColByName | GetJColByName |
| GetJColNames | GetJColNames |
| GetJManyCols | GetJManyCols |
| GetJManyColsByNames | GetJManyColsByNames |
| GetJManyRows | GetJManyRows |
| GetJManyRowsByNames | GetJManyRowsByNames |
| GetJNames | GetJNames |
| GetJRow | GetJRow |
| GetJRowByName | GetJRowByName |
| GetJRowNames | GetJRowNames |
| GetSeuratGroups | GetSeuratGroups |
| GetSubdiag | GetSubdiag |
| GetTD | GetTD |
| JMatInfo | JMatInfo |
| JMatInfoList | JMatInfoList |
| JMatToCsv | JMatToCsv |
| JWriteBin | JWriteBin |
| NumSilToClusterSil | NumSilToClusterSil |
| ScellpamGetDebug | ScellpamGetDebug |
| ScellpamSetDebug | ScellpamSetDebug |
| SceToJMat | SceToJMat |