| tlsR-package |
tlsR: Detection and Spatial Analysis of Tertiary Lymphoid Structures |
| calc_icat |
Calculate ICAT (Independent Component Analysis Trace) Index for TLS |
| detect_tic |
Detect T-cell Immune Clusters (TIC) on the Tissue |
| detect_TLS |
Detect Tertiary Lymphoid Structures using a KNN-density approach |
| plot_TLS |
Plot Spatial Map of TLS and T-cell Clusters |
| scan_clustering |
Scan Tissue for Local Immune Cell Clustering (Ripley's L Heatmap) |
| summarize_TLS |
Summarize Detected TLS Across Samples |
| tlsR |
tlsR: Detection and Spatial Analysis of Tertiary Lymphoid Structures |
| toy_ldata |
Toy Multiplexed Imaging Data |
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)