Geometric Analysis of Configurations in High-Dimensional Spaces

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Documentation for package ‘AMDconfigurations’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package README

Help Pages

assign_configurations	Fuzzy c-means clustering with multiple random initializations
compute_amd_curve	Compute the Average Membership Degree (AMD) curve
estimate_sigma_equivalent	Estimate the sigma-equivalent value from an AMD curve
Fulldata	Ecological dataset used in the example
plot.amd_curve	Plot method for AMD curve objects
plot.amd_sigma	Plot method for sigma-equivalent objects
plot_AMD	Plot the AMD curve
print.amd_curve	Print method for AMD curve objects
print.amd_sigma	Print method for sigma-equivalent objects
summary.amd_curve	Summary method for AMD curve objects
summary.amd_sigma	Summary method for sigma-equivalent objects
summary.sigma_equivalent	Summary method for sigma_equivalent objects
Transcdata_small	Reduced transcriptomic dataset (1000 variables)