Siena - Simulation Investigation for Empirical Network Analysis
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Documentation for package ‘RSiena’ version 1.6.6
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A B C D E F G H I M N O P R S T U V W X
| RSiena-package | Simulation Investigation for Empirical Network Analysis |
-- A --
| allEffects | Internal data frame used to construct effect objects. |
| as_composition_file_rsiena | Functions to create a Siena composition change object |
| as_composition_rsiena | Functions to create a Siena composition change object |
| as_covariate_rsiena | Function to create a covariate object |
| as_dependent_rsiena | Function to create a dependent variable for a Siena model |
| as_nodeset_rsiena | Function to create a node set |
-- B --
| BehaviorDistribution | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| behaviorExtraction | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| behModelType | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
-- C --
| coCovar | Function to create a constant covariate object |
| coDyadCovar | Function to create a constant dyadic covariate object |
| coef | Methods for processing sienaFit objects, produced by 'siena' |
| coef.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
| covariate | Function to create a covariate object |
-- D --
| descriptives | Functions to assess goodness of fit for SAOMs |
| descriptives.sienaGOF | Functions to assess goodness of fit for SAOMs |
| dyadicCov | Auxiliary functions for goodness of fit assessment by 'test_gof' |
-- E --
| edit.sienaEffects | Allow editing of a sienaEffects object if a gui is available. |
| effectsDocumentation | Function to create a table of documentation of effect names, short names etc. |
| egoAlterCombi | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| egoAlterCovarComb | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| entropy | Functions to assess the relative importance of effects at observation moments |
-- F --
| funnelPlot | Plot function for a list of sienaFit objects |
-- G --
| getEffects | Function to create a Siena effects object |
-- H --
| HN3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| hn3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| HN3403 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| HN3404 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| HN3406 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
-- I --
| includeEffects | Function to include effects in a Siena model |
| includeGMoMStatistics | Function to include GMoM statistics in a Siena model |
| includeInteraction | Function to create user-specified interactions for a Siena model. |
| includeTimeDummy | Function to include time dummy effects in a Siena model |
| IndegreeDistribution | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| influence.Table | Function to construct influence tables for SAOMs |
| influence.table | Function to construct influence tables for SAOMs |
| influenceTable | Function to construct influence tables for SAOMs |
| influencetable | Function to construct influence tables for SAOMs |
| initializeFRAN | Versions of FRAN |
| interpret_influence | Function to construct influence tables for SAOMs |
| interpret_influence.sienaFit | Function to construct influence tables for SAOMs |
| interpret_selection | Function to construct selection tables for SAOMs |
| interpret_selection.sienaFit | Function to construct selection tables for SAOMs |
| interpret_size | Functions to assess the relative importance of effects at observation moments |
| interpret_size.methods | Functions to assess the relative importance of effects at observation moments |
| interpret_size.sienaEffects | Functions to assess the relative importance of effects at observation moments |
| interpret_size.sienaFit | Functions to assess the relative importance of effects at observation moments |
| interpret_size_dynamics | Functions to assess the dynamics of relative importance of effects between observation moments |
| iwlsm | Function to fit an iterated weighted least squares model. |
| iwlsm.default | Function to fit an iterated weighted least squares model. |
| iwlsm.formula | Function to fit an iterated weighted least squares model. |
-- M --
| make_constraint | Function to change the values of the constraints between networks |
| make_constraint.sienadata | Function to change the values of the constraints between networks |
| make_constraint.sienaGroup | Function to change the values of the constraints between networks |
| make_data_rsiena | Function to create a Siena data object |
| make_group_rsiena | Function to group together several Siena data objects |
| make_specification | Function to create a Siena effects object |
| make_specification.sienadata | Function to create a Siena effects object |
| make_specification.sienaGroup | Function to create a Siena effects object |
| maxlikec | Versions of FRAN |
| meta.table | Methods for processing sienaMeta objects |
| meta_siena | Function to perform a meta analysis of a collection of Siena fits. |
| mixedTriadCensus | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| model.create | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| modelType | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| Multipar.RSiena | Wald and score tests for RSiena results |
-- N --
| N3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| n3401 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| N3403 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| N3404 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| N3406 | Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt. |
| networkExtraction | Auxiliary functions for goodness of fit assessment by 'test_gof' |
-- O --
| OutdegreeDistribution | Auxiliary functions for goodness of fit assessment by 'test_gof' |
-- P --
| plot.interpret_size | Functions to assess the relative importance of effects at observation moments |
| plot.sienaGOF | Functions to assess goodness of fit for SAOMs |
| plot.sienaMeta | Methods for processing sienaMeta objects |
| plot.sienaRI | Functions to assess the relative importance of effects at observation moments |
| plot.sienaRIDynamics | Functions to assess the dynamics of relative importance of effects between observation moments |
| plot.sienaTimeTest | Functions to plot assessment of time heterogeneity of parameters |
| predict.iwlsm | Function to fit an iterated weighted least squares model. |
| print.interpret_size | Functions to assess the relative importance of effects at observation moments |
| print.iwlsm | Function to fit an iterated weighted least squares model. |
| print.sienaEffects | Print methods for Siena effects objects |
| print.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
| print.sienaMeta | Methods for processing sienaMeta objects |
| print.sienaRI | Functions to assess the relative importance of effects at observation moments |
| print.sienaTest | Print method for Wald and score tests for RSiena results |
| print.sienaTimeTest | Function to assess and account for time heterogeneity of parameters |
| print.summary.iwlsm | Summary method for Iterative Weighted Least Squares Models |
| print.summary.sienaEffects | Print methods for Siena effects objects |
| print.summary.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
| print.summary.sienaMeta | Methods for processing sienaMeta objects |
| print.xtable.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
| print01Report | Function to produce a basic descriptive report of SIENA data sets |
| psi.iwlsm | Function to fit an iterated weighted least squares model. |
-- R --
| RSiena | Simulation Investigation for Empirical Network Analysis |
-- S --
| s50 | Network data: excerpt from "Teenage Friends and Lifestyle Study" data. |
| s501 | Network 1 data: excerpt from "Teenage Friends and Lifestyle Study" data. |
| s502 | Network 2 data: excerpt from "Teenage Friends and Lifestyle Study" data. |
| s503 | Network 3 data: excerpt from "Teenage Friends and Lifestyle Study" data. |
| s50a | Alcohol use data: excerpt from "Teenage Friends and Lifestyle Study" data |
| s50s | Smoking data: excerpt from "Teenage Friends and Lifestyle Study" data |
| score.Test | Wald and score tests for RSiena results |
| scoreTest | Wald and score tests for RSiena results |
| scoretest | Wald and score tests for RSiena results |
| selection.Table | Function to construct selection tables for SAOMs |
| selection.table | Function to construct selection tables for SAOMs |
| selectionTable | Function to construct selection tables for SAOMs |
| selectiontable | Function to construct selection tables for SAOMs |
| setEffect | Function to change the specification of a Siena model by setting various columns in an effects object. |
| set_algorithm | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| set_algorithm_saom | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| set_effect | Function to change the specification of a Siena model by setting various columns in an effects object. |
| set_effect.sienaEffects | Function to change the specification of a Siena model by setting various columns in an effects object. |
| set_interaction | Function to create user-specified interactions for a Siena model. |
| set_interaction.sienaEffects | Function to create user-specified interactions for a Siena model. |
| set_model | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| set_model_saom | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| set_output | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| set_output_saom | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| siena | Function to estimate parameters in a Siena model |
| siena.sienadata | Function to estimate parameters in a Siena model |
| siena.Test | Wald and score tests for RSiena results |
| siena07 | Function to estimate parameters in a Siena model |
| siena08 | Function to perform a meta analysis of a collection of Siena fits. |
| sienaAlgorithm | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| sienaAlgorithmCreate | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| sienaAlgorithmSettings | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| sienaCompositionChange | Functions to create a Siena composition change object |
| sienaCompositionChangeFromFile | Functions to create a Siena composition change object |
| sienadata | Function to create a Siena data object |
| sienaDataConstraint | Function to change the values of the constraints between networks |
| sienaDataCreate | Function to create a Siena data object |
| sienaDependent | Function to create a dependent variable for a Siena model |
| sienaEffects | Function to create a Siena effects object |
| sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
| sienaFit.methods | Methods for processing sienaFit objects, produced by 'siena' |
| sienaGOF | Functions to assess goodness of fit for SAOMs |
| sienaGOF-auxiliary | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| sienaGroup | Function to group together several Siena data objects |
| sienaGroupCreate | Function to group together several Siena data objects |
| sienaGroupEffects | Function to create a Siena effects object |
| sienaMeta | Function to perform a meta analysis of a collection of Siena fits. |
| sienaModel | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| sienaModelCreate | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| sienaNet | Function to create a dependent variable for a Siena model |
| sienaNodeSet | Function to create a node set |
| sienaOutputOptions | Functions to create objects containing various aspects of algorithm specifications for parameter estimation in RSiena |
| sienaRI | Functions to assess the relative importance of effects at observation moments |
| sienaRIDynamics | Functions to assess the dynamics of relative importance of effects between observation moments |
| sienaTest | Wald and score tests for RSiena results |
| sienatest | Wald and score tests for RSiena results |
| sienaTest.methods | Print method for Wald and score tests for RSiena results |
| sienaTimeTest | Function to assess and account for time heterogeneity of parameters |
| siena_table | Methods for processing sienaFit objects, produced by 'siena' |
| simstats0c | Versions of FRAN |
| sparseMatrixExtraction | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| summary.iwlsm | Summary method for Iterative Weighted Least Squares Models |
| summary.sienaEffects | Print methods for Siena effects objects |
| summary.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
| summary.sienaMeta | Methods for processing sienaMeta objects |
-- T --
| terminateFRAN | Versions of FRAN |
| testSame.RSiena | Wald and score tests for RSiena results |
| test_gof | Functions to assess goodness of fit for SAOMs |
| test_gof.sienaFit | Functions to assess goodness of fit for SAOMs |
| test_gof_auxiliary | Auxiliary functions for goodness of fit assessment by 'test_gof' |
| test_parameter | Wald and score tests for RSiena results |
| test_parameter.sienaFit | Wald and score tests for RSiena results |
| test_time | Function to assess and account for time heterogeneity of parameters |
| test_time.sienaFit | Function to assess and account for time heterogeneity of parameters |
| tmp3 | van de Bunt's Freshman dataset, time point 3 |
| tmp4 | van de Bunt's Freshman dataset, time point 4 |
| transformScript | Function to transform 'RSiena' and 'multiSiena' scripts |
| TriadCensus | Auxiliary functions for goodness of fit assessment by 'test_gof' |
-- U --
| updateSpecification | A function to update the initial values of the parameters, and a function to update an effects object. |
| updateTheta | A function to update the initial values of the parameters, and a function to update an effects object. |
| update_specification | A function to update the initial values of the parameters, and a function to update an effects object. |
| update_specification.sienaEffects | A function to update the initial values of the parameters, and a function to update an effects object. |
| update_theta | A function to update the initial values of the parameters, and a function to update an effects object. |
| update_theta.sienaEffects | A function to update the initial values of the parameters, and a function to update an effects object. |
-- V --
| varCovar | Function to create a changing covariate object. |
| varDyadCovar | Function to create a changing dyadic covariate object. |
| vcov | Methods for processing sienaFit objects, produced by 'siena' |
| vcov.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
-- W --
| Wald | Wald and score tests for RSiena results |
| Wald.RSiena | Wald and score tests for RSiena results |
| write_report | Function to produce a basic descriptive report of SIENA data sets |
| write_report.sienadata | Function to produce a basic descriptive report of SIENA data sets |
| write_result | Methods for processing sienaFit objects, produced by 'siena' |
| write_result.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |
-- X --
| xtable | Access xtable in package xtable |
| xtable.sienaFit | Methods for processing sienaFit objects, produced by 'siena' |