Bayesian Latent Gaussian Modelling using INLA and Extensions

Documentation for package ‘inlabru’ version 2.14.0

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inlabru

-- A --

as.bru_options	Create or update an options objects
as.character.bru_log	Access methods for 'bru_log' objects
as_bm_list	Methods for mapper lists
as_bm_list.bm_list	Methods for mapper lists
as_bm_list.bru_comp_list	Methods for mapper lists
as_bm_list.list	Methods for mapper lists
as_bru_comp	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp.bru_comp	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_comp	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_comp_list	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_info	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.bru_model	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.formula	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_comp_list.list	Conversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_info	Methods for bru_info objects
as_bru_info.bru	Methods for bru_info objects
as_bru_info.bru_info	Methods for bru_info objects
as_bru_mapper	Methods for mapper extraction
as_bru_mapper.bru_comp	Methods for mapper extraction
as_bru_mapper.bru_mapper	Methods for mapper extraction
as_bru_mapper.bru_subcomp	Methods for mapper extraction
as_bru_obs	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs.bru_obs	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_info	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_model	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_obs	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.bru_obs_list	Conversion methods for 'bru_obs' and 'bru_obs_list' objects
as_bru_obs_list.list	Conversion methods for 'bru_obs' and 'bru_obs_list' objects

-- B --

bincount	1D LGCP bin count simulation and comparison with data
bm_aggregate	Mapper for aggregation
bm_autodetect	Interface between 'bru_input' and 'bru_mapper'
bm_collect	Mapper for concatenated variables
bm_const	Constant mapper
bm_factor	Mapper for factor variables
bm_fmesher	Mapper for general 'fmesher' function space objects
bm_fm_mesh_1d	Mapper for 'fm_mesh_1d'
bm_harmonics	Mapper for cos/sin functions
bm_index	Mapper for indexed variables
bm_linear	Mapper for a linear effect
bm_list	Methods for mapper lists
bm_logitaverage	Mapper for logit-sum-inverse-logit aggregation
bm_logsumexp	Mapper for log-sum-exp aggregation
bm_marginal	Mapper for marginal distribution transformation
bm_matrix	Mapper for matrix multiplication
bm_multi	Mapper for tensor product domains
bm_pipe	Mapper for linking several mappers in sequence
bm_reparam	Mapper for reparameterising mapper states
bm_repeat	Mapper for repeating a mapper
bm_scale	Mapper for element-wise scaling
bm_shift	Mapper for element-wise shifting
bm_sum	Mapper for adding multiple mappers
bm_taylor	Mapper for linear Taylor approximations
bru	Convenient model fitting using (iterated) INLA
bru_comp	Latent model component construction
bru_comp.character	Latent model component construction
bru_component	Latent model component construction
bru_component_eval	Evaluate component values in predictor expressions
bru_component_list	Methods for inlabru component lists
bru_comp_env	Get/set component environment data
bru_comp_env<-	Get/set component environment data
bru_comp_env_extra	Get/set component environment data
bru_comp_env_extra<-	Get/set component environment data
bru_comp_eval	Evaluate component values in predictor expressions
bru_comp_list	Methods for inlabru component lists
bru_comp_list.bru_comp	Methods for inlabru component lists
bru_comp_list.bru_comp_list	Methods for inlabru component lists
bru_comp_list.formula	Methods for inlabru component lists
bru_comp_list.list	Methods for inlabru component lists
bru_convergence_plot	Plot inlabru convergence diagnostics
bru_fill_missing	Fill in missing values in Spatial grids
bru_forward_transformation	Transformation tools
bru_get_mapper	Extract mapper information from INLA model component objects
bru_get_mapper.inla.cgeneric	Extract mapper information from INLA model component objects
bru_get_mapper.inla.rgeneric	Extract mapper information from INLA model component objects
bru_get_mapper.inla.spde	Extract mapper information from INLA model component objects
bru_get_mapper.inla_model_reparam	Extract mapper information from INLA model component objects
bru_get_mapper_safely	Extract mapper information from INLA model component objects
bru_index	Extract predictor or component index information
bru_index.bru	Extract predictor or component index information
bru_index.bru_comp	Extract predictor or component index information
bru_index.bru_comp_list	Extract predictor or component index information
bru_index.bru_info	Extract predictor or component index information
bru_index.bru_model	Extract predictor or component index information
bru_index.bru_obs	Extract predictor or component index information
bru_index.bru_obs_list	Extract predictor or component index information
bru_info	Methods for bru_info objects
bru_info.bru	Methods for bru_info objects
bru_info.character	Methods for bru_info objects
bru_input	Store and evaluate component inputs
bru_input.bm_collect	Store and evaluate component inputs
bru_input.bm_multi	Store and evaluate component inputs
bru_input.bm_pipe	Store and evaluate component inputs
bru_input.bm_repeat	Store and evaluate component inputs
bru_input.bm_sum	Store and evaluate component inputs
bru_input.bru_comp	Store and evaluate component inputs
bru_input.bru_comp_list	Store and evaluate component inputs
bru_input.bru_input	Store and evaluate component inputs
bru_input.bru_mapper	Store and evaluate component inputs
bru_input.bru_model	Store and evaluate component inputs
bru_input.bru_obs	Store and evaluate component inputs
bru_input.bru_obs_list	Store and evaluate component inputs
bru_inverse_transformation	Transformation tools
bru_is_additive	Check for predictor expression additivity
bru_is_additive.bru_obs	Check for predictor expression additivity
bru_is_additive.bru_obs_list	Check for predictor expression additivity
bru_is_additive.bru_pred_expr	Check for predictor expression additivity
bru_is_additive.character	Check for predictor expression additivity
bru_is_additive.expression	Check for predictor expression additivity
bru_is_additive.formula	Check for predictor expression additivity
bru_is_linear	Check for predictor linearity
bru_is_linear.bru	Check for predictor linearity
bru_is_linear.bru_comp	Check for predictor linearity
bru_is_linear.bru_comp_list	Check for predictor linearity
bru_is_linear.bru_info	Check for predictor linearity
bru_is_linear.bru_mapper	Check for predictor linearity
bru_is_linear.bru_model	Check for predictor linearity
bru_is_linear.bru_obs	Check for predictor linearity
bru_is_linear.bru_obs_list	Check for predictor linearity
bru_is_linear.bru_pred_expr	Check for predictor linearity
bru_is_rowwise	Check for predictor rowwise evaluability
bru_is_rowwise.bru_comp	Check for predictor rowwise evaluability
bru_is_rowwise.bru_comp_list	Check for predictor rowwise evaluability
bru_is_rowwise.bru_mapper	Check for predictor rowwise evaluability
bru_is_rowwise.bru_obs	Check for predictor rowwise evaluability
bru_is_rowwise.bru_obs_list	Check for predictor rowwise evaluability
bru_is_rowwise.bru_pred_expr	Check for predictor rowwise evaluability
bru_like_list	Observation model construction for usage with 'bru()'
bru_log	Access methods for 'bru_log' objects
bru_log.bru	Access methods for 'bru_log' objects
bru_log.bru_log	Access methods for 'bru_log' objects
bru_log.character	Access methods for 'bru_log' objects
bru_log.iinla	Access methods for 'bru_log' objects
bru_log_abort	Add a log message
bru_log_bookmark	Methods for 'bru_log' bookmarks
bru_log_bookmarks	Methods for 'bru_log' bookmarks
bru_log_index	Position methods for 'bru_log' objects
bru_log_message	Add a log message
bru_log_new	Create a 'bru_log' object
bru_log_offset	Position methods for 'bru_log' objects
bru_log_reset	Clear log contents
bru_log_warn	Add a log message
bru_mapper	Constructors for 'bru_mapper' objects
bru_mapper.fm_mesh_1d	Mapper for 'fm_mesh_1d'
bru_mapper.fm_mesh_2d	Mapper for general 'fmesher' function space objects
bru_mapper_aggregate	Mapper for aggregation
bru_mapper_collect	Mapper for concatenated variables
bru_mapper_const	Constant mapper
bru_mapper_define	Constructors for 'bru_mapper' objects
bru_mapper_factor	Mapper for factor variables
bru_mapper_fmesher	Mapper for general 'fmesher' function space objects
bru_mapper_generics	Generic methods for bru_mapper objects
bru_mapper_harmonics	Mapper for cos/sin functions
bru_mapper_index	Mapper for indexed variables
bru_mapper_linear	Mapper for a linear effect
bru_mapper_logsumexp	Mapper for log-sum-exp aggregation
bru_mapper_marginal	Mapper for marginal distribution transformation
bru_mapper_matrix	Mapper for matrix multiplication
bru_mapper_multi	Mapper for tensor product domains
bru_mapper_pipe	Mapper for linking several mappers in sequence
bru_mapper_repeat	Mapper for repeating a mapper
bru_mapper_scale	Mapper for element-wise scaling
bru_mapper_shift	Mapper for element-wise shifting
bru_mapper_sum	Mapper for adding multiple mappers
bru_mapper_taylor	Mapper for linear Taylor approximations
bru_model_mapper_methods	Mapper methods for model objects
bru_names	Extract standardised names from a bru or inla result object
bru_names.bru	Extract standardised names from a bru or inla result object
bru_names.inla	Extract standardised names from a bru or inla result object
bru_obs	Observation model construction for usage with 'bru()'
bru_obs_list	Observation model construction for usage with 'bru()'
bru_obs_list.bru_obs	Observation model construction for usage with 'bru()'
bru_obs_list.bru_obs_list	Observation model construction for usage with 'bru()'
bru_obs_list.list	Observation model construction for usage with 'bru()'
bru_options	Create or update an options objects
bru_options_check	Create or update an options objects
bru_options_default	Create or update an options objects
bru_options_get	Create or update an options objects
bru_options_reset	Create or update an options objects
bru_options_set	Create or update an options objects
bru_options_set_local	Create or update an options objects
bru_rerun	Convenient model fitting using (iterated) INLA
bru_response_size	Response size queries
bru_response_size.bru	Response size queries
bru_response_size.bru_info	Response size queries
bru_response_size.bru_obs	Response size queries
bru_response_size.bru_obs_list	Response size queries
bru_response_size.default	Response size queries
bru_response_size.inla.surv	Response size queries
bru_response_size.list	Response size queries
bru_set_missing	Set missing values in observation models
bru_set_missing.bru	Set missing values in observation models
bru_set_missing.bru_info	Set missing values in observation models
bru_set_missing.bru_obs	Set missing values in observation models
bru_set_missing.bru_obs_list	Set missing values in observation models
bru_set_missing.data.frame	Set missing values in observation models
bru_set_missing.default	Set missing values in observation models
bru_set_missing.inla.surv	Set missing values in observation models
bru_set_missing<-	Set missing values in observation models
bru_timings	Extract timing information from fitted bru object
bru_timings.bru	Extract timing information from fitted bru object
bru_timings_plot	Plot inlabru iteration timings
bru_transformation	Transformation tools

-- C --

c.bm_list	Methods for mapper lists
c.bru_comp	Methods for inlabru component lists
c.bru_comp_list	Methods for inlabru component lists
c.bru_log	Access methods for 'bru_log' objects
c.bru_mapper	Methods for mapper lists
c.bru_obs	Observation model construction for usage with 'bru()'
c.bru_obs_list	Observation model construction for usage with 'bru()'
component	Latent model component construction
component_list	Methods for inlabru component lists
countdata1	1-Dimensional Homogeneous Poisson example.
countdata2	1-Dimensional NonHomogeneous Poisson example.
countdata3a	1-Dimensional NonHomogeneous Poisson example.
countdata3b	1-Dimensional NonHomogeneous Poisson example.
cov2_1D	1-Dimensional NonHomogeneous Poisson example.

-- D --

deltaIC	Summarise DIC from 'lgcp' estimates.
devel.cvmeasure	Variance and correlations measures for prediction components

-- E --

eval_spatial	Evaluate spatial covariates
eval_spatial.sf	Evaluate spatial covariates
eval_spatial.SpatialGridDataFrame	Evaluate spatial covariates
eval_spatial.SpatialPixelsDataFrame	Evaluate spatial covariates
eval_spatial.SpatialPolygonsDataFrame	Evaluate spatial covariates
eval_spatial.SpatRaster	Evaluate spatial covariates
eval_spatial.stars	Evaluate spatial covariates
E_nc1	1-Dimensional Homogeneous Poisson example.
E_nc2	1-Dimensional NonHomogeneous Poisson example.
E_nc3a	1-Dimensional NonHomogeneous Poisson example.
E_nc3b	1-Dimensional NonHomogeneous Poisson example.

-- F --

format.bm_collect	mapper object summaries
format.bm_list	mapper object summaries
format.bm_multi	mapper object summaries
format.bm_pipe	mapper object summaries
format.bm_reparam	mapper object summaries
format.bm_repeat	mapper object summaries
format.bm_sum	mapper object summaries
format.bru_input	Summarise component inputs
format.bru_log	Access methods for 'bru_log' objects
format.bru_mapper	mapper object summaries

-- G --

generate	Generate samples from fitted bru models
generate.bru	Generate samples from fitted bru models
gg	ggplot2 geomes for inlabru related objects
gg.bru_prediction	Geom for predictions
gg.data.frame	Geom for predictions
gg.fm_mesh_1d	Geom for fm_mesh_1d objects
gg.fm_mesh_2d	Geom for fm_mesh_2d objects
gg.matrix	Geom for matrix
gg.prediction	Geom for predictions
gg.RasterLayer	Geom for RasterLayer objects
gg.sf	Geom helper for sf objects
gg.SpatialGridDataFrame	Geom for SpatialGridDataFrame objects
gg.SpatialLines	Geom for SpatialLines objects
gg.SpatialPixels	Geom for SpatialPixels objects
gg.SpatialPixelsDataFrame	Geom for SpatialPixelsDataFrame objects
gg.SpatialPoints	Geom for SpatialPoints objects
gg.SpatialPolygons	Geom for SpatialPolygons objects
gg.SpatRaster	Geom wrapper for SpatRaster objects
globe	Visualize a globe using RGL
glplot	Render objects using RGL
glplot.fm_mesh_2d	Render objects using RGL
glplot.SpatialLines	Render objects using RGL
glplot.SpatialPoints	Render objects using RGL
gorillas_sf	Gorilla nesting sites in sf format
gorillas_sf_gcov	Gorilla nesting sites in sf format
gorillas_sp	Gorilla nesting sites in sf format

-- I --

ibm_eval	Evaluate a mapping
ibm_eval.bm_aggregate	Evaluate a mapping
ibm_eval.bm_collect	Evaluate a mapping
ibm_eval.bm_const	Evaluate a mapping
ibm_eval.bm_logitaverage	Evaluate a mapping
ibm_eval.bm_logsumexp	Evaluate a mapping
ibm_eval.bm_marginal	Evaluate a mapping
ibm_eval.bm_multi	Evaluate a mapping
ibm_eval.bm_pipe	Evaluate a mapping
ibm_eval.bm_reparam	Evaluate a mapping
ibm_eval.bm_repeat	Evaluate a mapping
ibm_eval.bm_scale	Evaluate a mapping
ibm_eval.bm_shift	Evaluate a mapping
ibm_eval.bm_sum	Evaluate a mapping
ibm_eval.bm_taylor	Evaluate a mapping
ibm_eval.default	Evaluate a mapping
ibm_eval2	Evaluate a mapper and its Jacobian
ibm_eval2.bm_pipe	Evaluate a mapper and its Jacobian
ibm_eval2.default	Evaluate a mapper and its Jacobian
ibm_inla_subset	Find index subset of INLA visible states
ibm_inla_subset.default	Find index subset of INLA visible states
ibm_input	Interface between 'bru_input' and 'bru_mapper'
ibm_input_available	Interface between 'bru_input' and 'bru_mapper'
ibm_input_get	Interface between 'bru_input' and 'bru_mapper'
ibm_input_new	Interface between 'bru_input' and 'bru_mapper'
ibm_input_set	Interface between 'bru_input' and 'bru_mapper'
ibm_invalid_output	Detect invalid input to a mapper
ibm_invalid_output.bm_collect	Detect invalid input to a mapper
ibm_invalid_output.bm_index	Detect invalid input to a mapper
ibm_invalid_output.bm_multi	Detect invalid input to a mapper
ibm_invalid_output.bm_repeat	Detect invalid input to a mapper
ibm_invalid_output.bm_sum	Detect invalid input to a mapper
ibm_invalid_output.default	Detect invalid input to a mapper
ibm_is_linear	Check if a mapper is linear/affine
ibm_is_linear.bm_collect	Check if a mapper is linear/affine
ibm_is_linear.bm_multi	Check if a mapper is linear/affine
ibm_is_linear.bm_sum	Check if a mapper is linear/affine
ibm_is_linear.default	Check if a mapper is linear/affine
ibm_is_rowwise	Check if a mapper is rowwise
ibm_is_rowwise.default	Check if a mapper is rowwise
ibm_jacobian	Jacobian of a mapper
ibm_jacobian.bm_aggregate	Jacobian of a mapper
ibm_jacobian.bm_collect	Jacobian of a mapper
ibm_jacobian.bm_const	Jacobian of a mapper
ibm_jacobian.bm_factor	Jacobian of a mapper
ibm_jacobian.bm_fmesher	Jacobian of a mapper
ibm_jacobian.bm_fm_mesh_1d	Jacobian of a mapper
ibm_jacobian.bm_harmonics	Jacobian of a mapper
ibm_jacobian.bm_index	Jacobian of a mapper
ibm_jacobian.bm_linear	Jacobian of a mapper
ibm_jacobian.bm_logitaverage	Jacobian of a mapper
ibm_jacobian.bm_logsumexp	Jacobian of a mapper
ibm_jacobian.bm_marginal	Jacobian of a mapper
ibm_jacobian.bm_matrix	Jacobian of a mapper
ibm_jacobian.bm_multi	Jacobian of a mapper
ibm_jacobian.bm_pipe	Jacobian of a mapper
ibm_jacobian.bm_reparam	Jacobian of a mapper
ibm_jacobian.bm_repeat	Jacobian of a mapper
ibm_jacobian.bm_scale	Jacobian of a mapper
ibm_jacobian.bm_shift	Jacobian of a mapper
ibm_jacobian.bm_sum	Jacobian of a mapper
ibm_jacobian.bm_taylor	Jacobian of a mapper
ibm_jacobian.default	Jacobian of a mapper
ibm_linear	Compute a mapper linearisation
ibm_linear.bm_collect	Compute a mapper linearisation
ibm_linear.bm_list	Mapper methods for model objects
ibm_linear.bm_multi	Compute a mapper linearisation
ibm_linear.bm_repeat	Compute a mapper linearisation
ibm_linear.bm_sum	Compute a mapper linearisation
ibm_linear.bru_comp	Compute a mapper linearisation
ibm_linear.bru_comp_list	Mapper methods for model objects
ibm_linear.bru_model	Mapper methods for model objects
ibm_linear.default	Compute a mapper linearisation
ibm_n	Size of the latent vector of a mapping
ibm_n.bm_aggregate	Size of the latent vector of a mapping
ibm_n.bm_collect	Size of the latent vector of a mapping
ibm_n.bm_const	Size of the latent vector of a mapping
ibm_n.bm_factor	Size of the latent vector of a mapping
ibm_n.bm_fmesher	Size of the latent vector of a mapping
ibm_n.bm_fm_mesh_1d	Size of the latent vector of a mapping
ibm_n.bm_harmonics	Size of the latent vector of a mapping
ibm_n.bm_linear	Size of the latent vector of a mapping
ibm_n.bm_marginal	Size of the latent vector of a mapping
ibm_n.bm_matrix	Size of the latent vector of a mapping
ibm_n.bm_multi	Size of the latent vector of a mapping
ibm_n.bm_pipe	Size of the latent vector of a mapping
ibm_n.bm_reparam	Size of the latent vector of a mapping
ibm_n.bm_repeat	Size of the latent vector of a mapping
ibm_n.bm_scale	Size of the latent vector of a mapping
ibm_n.bm_shift	Size of the latent vector of a mapping
ibm_n.bm_sum	Size of the latent vector of a mapping
ibm_n.bm_taylor	Size of the latent vector of a mapping
ibm_n.default	Size of the latent vector of a mapping
ibm_names	Names of submapper
ibm_names.bm_collect	Names of submapper
ibm_names.bm_multi	Names of submapper
ibm_names.bm_sum	Names of submapper
ibm_names.default	Names of submapper
ibm_names<-	Names of submapper
ibm_names<-.bm_collect	Names of submapper
ibm_names<-.bm_multi	Names of submapper
ibm_names<-.bm_sum	Names of submapper
ibm_names<-.bru_mapper_collect	Names of submapper
ibm_names<-.bru_mapper_multi	Names of submapper
ibm_names<-.bru_mapper_sum	Names of submapper
ibm_n_output	Output size of a mapping
ibm_n_output.bm_aggregate	Output size of a mapping
ibm_n_output.bm_collect	Output size of a mapping
ibm_n_output.bm_marginal	Output size of a mapping
ibm_n_output.bm_multi	Output size of a mapping
ibm_n_output.bm_pipe	Output size of a mapping
ibm_n_output.bm_reparam	Output size of a mapping
ibm_n_output.bm_repeat	Output size of a mapping
ibm_n_output.bm_scale	Output size of a mapping
ibm_n_output.bm_shift	Output size of a mapping
ibm_n_output.bm_sum	Output size of a mapping
ibm_n_output.bm_taylor	Output size of a mapping
ibm_n_output.default	Output size of a mapping
ibm_simplify	Simplify a mapper
ibm_simplify.bm_list	Mapper methods for model objects
ibm_simplify.bm_pipe	Simplify a mapper
ibm_simplify.bru_comp	Mapper methods for model objects
ibm_simplify.bru_comp_list	Mapper methods for model objects
ibm_simplify.bru_model	Mapper methods for model objects
ibm_simplify.default	Simplify a mapper
ibm_values	Value vector for a mapping
ibm_values.bm_aggregate	Value vector for a mapping
ibm_values.bm_collect	Value vector for a mapping
ibm_values.bm_const	Value vector for a mapping
ibm_values.bm_factor	Value vector for a mapping
ibm_values.bm_fmesher	Value vector for a mapping
ibm_values.bm_fm_mesh_1d	Value vector for a mapping
ibm_values.bm_linear	Value vector for a mapping
ibm_values.bm_marginal	Value vector for a mapping
ibm_values.bm_matrix	Value vector for a mapping
ibm_values.bm_multi	Value vector for a mapping
ibm_values.bm_pipe	Value vector for a mapping
ibm_values.bm_reparam	Value vector for a mapping
ibm_values.bm_repeat	Value vector for a mapping
ibm_values.bm_scale	Value vector for a mapping
ibm_values.bm_shift	Value vector for a mapping
ibm_values.bm_sum	Value vector for a mapping
ibm_values.bm_taylor	Value vector for a mapping
ibm_values.default	Value vector for a mapping
index_eval	Extract predictor or component index information
inlabru	inlabru

-- L --

lambda1_1D	1-Dimensional Homogeneous Poisson example.
lambda2_1D	1-Dimensional NonHomogeneous Poisson example.
lambda3_1D	1-Dimensional NonHomogeneous Poisson example.
length.bru_log	Access methods for 'bru_log' objects
lgcp	Log Gaussian Cox process (LGCP) inference using INLA
like	Observation model construction for usage with 'bru()'
like_list	Observation model construction for usage with 'bru()'

-- M --

mexdolphin_sf	Pan-tropical spotted dolphins in the Gulf of Mexico
mexdolphin_sp	Pan-tropical spotted dolphins in the Gulf of Mexico
mrsea	Marine renewables strategic environmental assessment
multiplot	Multiple ggplots on a page.

-- N --

new_bru_input

Store and evaluate component inputs

-- P --

plot.bru	Plot method for posterior marginals estimated by bru
plot.bru_prediction	Geom for predictions
plot.prediction	Geom for predictions
plotmarginal.inla	Plot method for posterior marginals estimated by bru
plotsample	Create a plot sample.
point2count	Convert a plot sample of points into one of counts.
Poisson1_1D	1-Dimensional Homogeneous Poisson example.
Poisson2_1D	1-Dimensional NonHomogeneous Poisson example.
Poisson3_1D	1-Dimensional NonHomogeneous Poisson example.
predict.bru	Prediction from fitted bru model
print.bm_list	mapper object summaries
print.bru	Convenient model fitting using (iterated) INLA
print.bru_info	Methods for bru_info objects
print.bru_input	Summarise component inputs
print.bru_log	Access methods for 'bru_log' objects
print.bru_mapper	mapper object summaries
print.bru_obs	Summary and print methods for observation models
print.bru_obs_list	Summary and print methods for observation models
print.summary_bru	Summary for an inlabru fit
print.summary_bru_info	Methods for bru_info objects
print.summary_bru_mapper	mapper object summaries
print.summary_bru_obs	Summary and print methods for observation models
print.summary_bru_obs_list	Summary and print methods for observation models
print.summary_bru_options	Print inlabru options
pts1	1-Dimensional Homogeneous Poisson example.
pts2	1-Dimensional NonHomogeneous Poisson example.
pts3	1-Dimensional NonHomogeneous Poisson example.

-- R --

robins_subset

-- S --

sample.lgcp	Sample from an inhomogeneous Poisson process
shrimp	Blue and red shrimp in the Western Mediterranean Sea
spde.posterior	Posteriors of SPDE hyper parameters and Matern correlation or covariance function.
summary.bru	Summary for an inlabru fit
summary.bru_info	Methods for bru_info objects
summary.bru_input	Summarise component inputs
summary.bru_mapper	mapper object summaries
summary.bru_obs	Summary and print methods for observation models
summary.bru_obs_list	Summary and print methods for observation models
summary.bru_options	Print inlabru options

-- T --

toygroups	Simulated 1D animal group locations and group sizes
toypoints	Simulated 2D point process data

-- misc --

[.bm_collect	Mapper for concatenated variables
[.bm_list	Methods for mapper lists
[.bm_multi	Mapper for tensor product domains
[.bm_sum	Mapper for adding multiple mappers
[.bru_comp_list	Methods for inlabru component lists
[.bru_log	Access methods for 'bru_log' objects
[.bru_mapper_collect	Mapper for concatenated variables
[.bru_mapper_multi	Mapper for tensor product domains
[.bru_mapper_sum	Mapper for adding multiple mappers
[.bru_obs_list	Observation model construction for usage with 'bru()'