Fitting and Analysing Thermal Performance Curves


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Documentation for package ‘rTPC’ version 1.1.0

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analytiskontodimas_2004 Analytis-Kontodimas model for fitting thermal performance curves
ashrafi1_2018 Ashrafi I model for fitting thermal performance curves
ashrafi2_2018 Ashrafi II model for fitting thermal performance curves
ashrafi3_2018 Ashrafi III model for fitting thermal performance curves
ashrafi4_2018 Ashrafi IV model for fitting thermal performance curves
ashrafi5_2018 Ashrafi V model for fitting thermal performance curves
atkin_2005 Atkin model for fitting thermal performance curves
bacteria_tpc Example thermal performance curves of bacterial growth
betatypesimplified_2008 Simplified Beta-type model for fitting thermal performance curves
beta_2012 Beta model for fitting thermal performance curves
boatman_2017 Boatman model for fitting thermal performance curves
briere1simplified_1999 Simplified Brière I model for fitting thermal performance curves
briere1_1999 Brière I model for fitting thermal performance curves
briere2simplified_1999 Simplified Brière II model for fitting thermal performance curves
briere2_1999 Brière II model for fitting thermal performance curves
briereextendedsimplified_2021 Simplified Extended Brière model for fitting thermal performance curves
briereextended_2021 Extended Brière model for fitting thermal performance curves
calc_params Calculate extra parameters of a thermal performance curve
chlorella_tpc Example metabolic thermal performance curves
delong_2017 DeLong enzyme-assisted Arrhenius model for fitting thermal performance curves
deutsch_2008 Modified deutsch model for fitting thermal performance curves
eubank_1973 Eubank model for fitting thermal performance curves
flextpc_2024 flexTPC model for fitting thermal performance curves
flinn_1991 Flinn model for fitting thermal performance curves
gaussianmodified_2006 Modified gaussian model for fitting thermal performance curves
gaussian_1987 Gaussian model for fitting thermal performance curves
get_breadth Estimate thermal performance breadth of a thermal performance curve
get_ctmax Estimate the critical thermal maximum of a thermal performance curve
get_ctmin Estimate the critical thermal minimum of a thermal performance curve
get_e Estimate the activation energy of a thermal performance curve
get_eh Estimate the deactivation energy of a thermal performance curve
get_lower_lims Set broad lower limits on parameter values
get_model_names Lists or searches the models available in rTPC
get_q10 Estimate the q10 value of a thermal performance curve
get_rmax Estimate maximum rate of a thermal performance curve
get_skewness Estimates skewness of a thermal performance curve
get_start_vals Estimate start values for TPC fitting
get_thermalsafetymargin Estimate thermal safety margin of a thermal performance curve
get_thermaltolerance Estimate thermal tolerance of a thermal performance curve
get_topt Estimate optimum temperature of a thermal performance curve
get_tpc_as_formula Get a formula object for calling a TPC
get_upper_lims Set broad upper limits on parameter values
hinshelwood_1947 Hinshelwood model for fitting thermal performance curves
janisch1_1925 Janisch I model for fitting thermal performance curves
janisch2_1925 Janisch II model for fitting thermal performance curves
joehnk_2008 Jöhnk model for fitting thermal performance curves
johnsonlewin_1946 Johnson-Lewin model for fitting thermal performance curves
kamykowski_1985 Kamykowski model for fitting thermal performance curves
lactin2_1995 Lactin2 model for fitting thermal performance curves
lobry_1991 Lobry model for fitting thermal performance curves
lrf_1991 Rosso model for fitting thermal performance curves
mitchell_2009 Mitchell Angilletta model for fitting thermal performance curves
modifiedgaussian_2006 Modified gaussian model for fitting thermal performance curves
oneill_1972 O'Neill model for fitting thermal performance curves
pawar_2018 Pawar model for fitting thermal performance curves
quadratic_2008 Quadratic model for fitting thermal performance curves
quickfit_tpc Perform a quick, automated, TPC fit
quickfit_tpc_multi Perform an automated quick tpc fit across models and curves
ratkowsky_1983 Ratkowsky model for fitting thermal performance curves
rezende_2019 Rezende model for fitting thermal performance curves
rosso_1993 Rosso model for fitting thermal performance curves
sharpeschoolfull_1981 Full Sharpe-Schoolfield model for fitting thermal performance curves
sharpeschoolhigh_1981 Sharpe-Schoolfield model (high temperature inactivation only) for fitting thermal performance curves
sharpeschoollow_1981 Sharpe-Schoolfield model (low temperature inactivation only) for fitting thermal performance curves
spain_1982 Spain model for fitting thermal performance curves
stinner_1974 Stinner model for fitting thermal performance curves
taylorsexton_1972 Taylor-Sexton model for fitting thermal performance curves
thomas_2012 Thomas model (2012) for fitting thermal performance curves
thomas_2017 Thomas model (2017) for fitting thermal performance curves
tomlinsonphillips_2015 Tomlinson-Phillips model for fitting thermal performance curves
warrendreyer_2006 Warren-Dreyer model for fitting thermal performance curves
weibull_1995 Weibull model for fitting thermal performance curves