aa_sub                  Perform amino acid substitutions
annotation_position     Create position-based annotations for A3
annotation_range        Create range-based annotations for A3
annotation_variant      Create variant annotations for A3
clinvar_variants        Fetch ClinVar variants for a gene and parse
                        them into A3Variant objects
concat                  Concatenate character vector to single string
                        for sequence input
create_A3               Create an A3 object from sequence, annotations,
                        and metadata
gene2sequence           Get the coding sequence of a gene
get_alphafold           Get AlphaFold info for a given UniProt ID
pdb_annotations         Fetch PDB structural annotations for a UniProt
                        accession
read_A3json             Read 'A3' object from JSON file
rtemis.a3-package       rtemis.a3: Amino Acid Annotation format
uniprot_sequence        Fetch a protein sequence from UniProt
uniprot_to_A3           Fetch a UniProt entry and parse it into an A3
                        object
write_A3json            Write 'A3' object to JSON file
