%||%	grapes-or-or-grapes
.align_spatial_data	dot-align_spatial_data
.assign_microenv_bins	dot-assign_microenv_bins
.bicor	dot-bicor
.bicor_matrix	dot-bicor_matrix
.bridge_score	dot-bridge_score
.bridge_score_batch	dot-bridge_score_batch
.build_heatmap_panel	dot-build_heatmap_panel
.build_knn_graph	dot-build_knn_graph
.build_panel_theme	dot-build_panel_theme
.build_prior_network	dot-build_prior_network
.build_result	dot-build_result
.build_spatial_knn	dot-build_spatial_knn
.cluster_cor	dot-cluster_cor
.cluster_cor_batch	dot-cluster_cor_batch
.compute_bicor	dot-compute_bicor
.compute_cluster_cor	dot-compute_cluster_cor
.compute_coexpression	dot-compute_coexpression
.compute_cross_celltype	dot-compute_cross_celltype
.compute_mi	dot-compute_mi
.compute_neighbourhood_score	dot-compute_neighbourhood_score
.compute_pair_metrics	dot-compute_pair_metrics
.compute_ratio_consistency	dot-compute_ratio_consistency
.compute_smoothed_cor	dot-compute_smoothed_cor
.compute_spatial_clq	dot-compute_spatial_clq
.compute_spatial_lee	dot-compute_spatial_lee
.cross_celltype	dot-cross_celltype
.cross_celltype_batch	dot-cross_celltype_batch
.cross_subtitle	dot-cross_subtitle
.extract_pairs_df	dot-extract_pairs_df
.extract_pair_vals	dot-extract_pair_vals
.get_expression_matrix	dot-get_expression_matrix
.get_go_gene_sets	dot-get_go_gene_sets
.get_kegg_gene_sets	dot-get_kegg_gene_sets
.get_spatial_coords	dot-get_spatial_coords
.has_spatial	dot-has_spatial
.integrate_scores	dot-integrate_scores
.msg	dot-msg
.mutual_info	dot-mutual_info
.mutual_info_batch	dot-mutual_info_batch
.neighbourhood_coexpr	dot-neighbourhood_coexpr
.neighbourhood_coexpr_batch	dot-neighbourhood_coexpr_batch
.neighbourhood_synergy	dot-neighbourhood_synergy
.neighbourhood_synergy_batch	dot-neighbourhood_synergy_batch
.plot_bridge_network_enhanced	dot-plot_bridge_network_enhanced
.prepare_expression_data	dot-prepare_expression_data
.prior_score	dot-prior_score
.prior_score_batch	dot-prior_score_batch
.ratio_consistency	dot-ratio_consistency
.ratio_consistency_batch	dot-ratio_consistency_batch
.resolve_cluster_ids	dot-resolve_cluster_ids
.row_vars	dot-row_vars
.select_features	dot-select_features
.smoothed_cor	dot-smoothed_cor
.smoothed_cor_batch	dot-smoothed_cor_batch
.smooth_expression	dot-smooth_expression
.validate_binning_params	dot-validate_binning_params
.validate_cor_method	dot-validate_cor_method
.validate_features	dot-validate_features
.validate_min_cells_expressed	dot-validate_min_cells_expressed
.validate_neighbourhood_params	dot-validate_neighbourhood_params
.validate_n_perm	dot-validate_n_perm
.validate_percentage	dot-validate_percentage
.validate_plot_inputs	dot-validate_plot_inputs
.validate_seurat	dot-validate_seurat
ABS_METRICS	ABS_METRICS
AssessGenePair	AssessGenePair
CONFIDENCE_THRESHOLDS	CONFIDENCE_THRESHOLDS
cross-celltype-metrics	cross-celltype-metrics
DEFAULT_PARAMS	DEFAULT_PARAMS
DEFAULT_WEIGHTS	DEFAULT_WEIGHTS
FindAllPairs	FindAllPairs
FindGenePairs	FindGenePairs
grapes-or-or-grapes	grapes-or-or-grapes
neighbourhood-metrics	neighbourhood-metrics
plot-utils	plot-utils
PlotBridgeNetwork	PlotBridgeNetwork
PlotPairCrossType	PlotPairCrossType
PlotPairDimplot	PlotPairDimplot
PlotPairHeatmap	PlotPairHeatmap
PlotPairNetwork	PlotPairNetwork
PlotPairScatter	PlotPairScatter
PlotPairSmoothed	PlotPairSmoothed
PlotPairSpatial	PlotPairSpatial
PlotPairSummary	PlotPairSummary
PlotPairSynergy	PlotPairSynergy
PlotPairViolin	PlotPairViolin
print.scPairs_gene_result	print.scPairs_gene_result
print.scPairs_pair_result	print.scPairs_pair_result
print.scPairs_result	print.scPairs_result
prior-knowledge	prior-knowledge
RAW_METRICS	RAW_METRICS
RESULT_COLUMNS	RESULT_COLUMNS
schema	schema
SCORE_CONFIDENCE_QUANTILES	SCORE_CONFIDENCE_QUANTILES
scpairs_testdata	scpairs_testdata
spatial-metrics	spatial-metrics
validation	validation
