Identifying Synergistic Gene Pairs in Single-Cell and Spatial
Transcriptomics
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Documentation for package ‘scPairs’ version 0.1.8
Help Pages
| AssessGenePair | Assess the Synergy of a Specific Gene Pair |
| FindAllPairs | Discover All Synergistic Gene Pairs |
| FindGenePairs | Find Synergistic Partners for a Given Gene |
| PlotBridgeNetwork | Plot Bridge Gene Network |
| PlotPairCrossType | Plot Cross-Cell-Type Interaction Heatmap |
| PlotPairDimplot | Plot Gene Pair Co-Expression on UMAP / Dimensionality Reduction |
| PlotPairHeatmap | Plot Synergy Score Heatmap |
| PlotPairNetwork | Plot Gene Interaction Network |
| PlotPairScatter | Scatter Plot of Two Genes (Cell-Level) |
| PlotPairSmoothed | Enhanced Co-Expression Visualization with Neighbourhood Smoothing |
| PlotPairSpatial | Plot Spatial Co-Expression Map |
| PlotPairSummary | Comprehensive Synergy Summary Plot |
| PlotPairSynergy | Visualize Synergistic Relationship Between Gene Pairs |
| PlotPairViolin | Violin Plot of Pair Expression Across Clusters |
| print.scPairs_gene_result | Print method for scPairs_gene_result |
| print.scPairs_pair_result | Print method for scPairs_pair_result |
| print.scPairs_result | Print method for scPairs_result |
| scpairs_testdata | Synthetic Seurat Test Object for scPairs Examples and Tests |