Package: OmicNetR
Type: Package
Title: Network-Based Integration of Multi-Omics Data Using Sparse CCA
Version: 0.1.1
Authors@R: 
    person(given = "Prem Prashant",
           family = "Chaudhary",
           role = c("aut", "cre"),
           email = "chaudharyp2@nih.gov")
Author: Prem Prashant Chaudhary [aut, cre]
Maintainer: Prem Prashant Chaudhary <chaudharyp2@nih.gov>
Description: Provides an end-to-end workflow for integrative analysis of
	two omics layers using sparse canonical correlation analysis (sCCA),
	including sample alignment, feature selection, network edge construction,
	and visualization of gene-metabolite relationships. The underlying methods
	are based on penalized matrix decomposition and sparse CCA
	(Witten, Tibshirani and Hastie (2009) <doi:10.1093/biostatistics/kxp008>),
	with design principles inspired by multivariate integrative frameworks
	such as mixOmics (Rohart et al. (2017) <doi:10.1371/journal.pcbi.1005752>).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: stats, graphics, grDevices, ggplot2, igraph
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), mixOmics
VignetteBuilder: knitr
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2026-01-01 19:28:41 UTC; chaudharyp2
Repository: CRAN
Date/Publication: 2026-01-08 19:30:14 UTC
Built: R 4.6.0; ; 2026-02-28 03:53:13 UTC; windows
