1269ee5eeb898719f71df2aa8565f1c4 *DESCRIPTION
8176002bd2250e4269861ba547f367bf *LICENSE
75da033147a9981e3efd3d91623f9aec *NAMESPACE
e3e16533ac3f7c8e74d0b14fd83f8c08 *R/AnalysisSpecs.R
0fb7cf493815b18e108cc631a9781270 *R/Coverage.R
649f102440b826fa8a7b8ef76379165d *R/GBKData.R
150d1221a8c791bd722304d7e54194d2 *R/IROps.R
19b330681185156d10568ee330fdbfd5 *R/OutputSpecs.R
50ee133c35cc70cc8c94f4a6ea8c7b6f *R/PACVr-package.R
cb53ab05641c941d0bb7f71b073cf1aa *R/PACVr.R
49895466480aa7310c54b44e4048ccc7 *R/RCircosOps.R
f4943c9151aff18db01b45d1d174a87f *R/compileStats.R
84ab16ec1ffc7c1688165f16b335cf27 *R/coverageCalcOps.R
6204c71c4f16afcfaec22024e6b6d36c *R/customRead.gb.R
7fe330a730001552a75d4b23c1cb7d55 *R/helpers.R
0d7f86f962a69e715492640995c6505d *R/parsingOps.R
912474adbb7b211b39d1655bf5a238b7 *R/quadripOps.R
b76a2326b4adab1fbdde7f69ce41a9d2 *R/readingOps.R
50983f40802d161be0da3c06d938c981 *R/visualisationOps.R
8ceeccd487cd1db57394333ce9efaeff *R/writingOps.R
3f1046253c2892cd9b094e88dd596c7a *R/zzz.R
b52aabe9a2757fc86742763db9dafc9b *build/partial.rdb
bab506703bfcb641ffff62300e207165 *build/vignette.rds
66c0a32f8d2a11f3a463a864bd4c78ac *inst/CITATION
1e0bd3b13c458df84097508241d948d3 *inst/doc/PACVr_Vignette.Rnw
42c475b68c3c895098e41e33430fe20b *inst/doc/PACVr_Vignette.pdf
d2104da377ebb942a9aac5a5f9596b57 *inst/extdata/MG936619/MG936619.gb
6cf626fabf6ad25acd14365e24277317 *inst/extdata/MG936619/MG936619_subsampled.bam
121187430abc455a9e1172455083919c *inst/extdata/NC_045072/NC_045072.gb
041f853d59ced193aec688eb57ea3b15 *inst/extdata/NC_045072/NC_045072_subsampled.bam
bf20446bc4fbb77c4a5f6eeaad62f2bc *inst/extdata/PACVr_Rscript.R
d30d269c5c073ba0051a7b39ccbf02ac *inst/extdata/PACVr_run_parallel.R
4adae9a4fd9f31ea5b102f84beca8235 *inst/extdata/README_USAGE/Mitochondrial_Genome.R
6423e096d51a2b406ee20d568e30e660 *inst/extdata/README_USAGE/Plastid_Genome.R
782c748e2c931a921f4cfdc7ed1976a3 *man/PACVr-package.Rd
145b76fd913eb802cfe000a057cd5892 *man/PACVr.complete.Rd
cd6ef8d13f8efcba3cc072025f306ec6 *man/RCircos.Env.Rd
a4254229d9d9c93677156fc0b78ba815 *tests/testthat.R
9393ef3b765af4fe1ec3a8660d1c5b50 *tests/testthat/data/gbkDataDF/MG936619-FALSE.rds
0c370f68618a21e660b832edad39d60d *tests/testthat/data/gbkDataDF/MG936619-TRUE.rds
1d0a7dd646524cd4766142ea56bf8297 *tests/testthat/data/gbkDataDF/NC_045072-FALSE.rds
f180b94f375d44cf0a91b1d92d82690b *tests/testthat/data/gbkDataDF/NC_045072-TRUE.rds
864925a9ca886ed9fac01554aeaace31 *tests/testthat/data/locations.rds
b0fac39e56f8055bd777a98f86c60f25 *tests/testthat/test-PACVr.R
6005a897615c81438eeb00670324048f *tests/testthat/test-readingOps.R
b69b8dac4a672602978294ca11e7a3a0 *vignettes/NC_045072__all_reads.pdf
53b78c2109a304f4c81d10b55dd27d1e *vignettes/NC_045072__map_to_multiple_locations.pdf
f9b41a0d3449738eb1954007bf0a23eb *vignettes/NC_045072__map_to_one_location_only.pdf
1e0bd3b13c458df84097508241d948d3 *vignettes/PACVr_Vignette.Rnw
