f8df16bb1b0ae7deb7e2960986b6807d *DESCRIPTION
0ae58d8bae77cbefcb14be0ed15ff465 *NAMESPACE
a69ca066fa9cf6240c84e8b9c44411b6 *R/BH_diagnostics.R
36540e8cff04e772621d06be102ea6b0 *R/BH_elasticity.R
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d2b4bce64dd8c8f3c5e367b75aa82f63 *R/diag_calibration.R
8b7a776aafb292512ab3dedc61f7827e *R/diag_p_calibration.R
e30b6b7c3fb5e38c51b607778b900640 *R/diag_scope.R
b940168eb83483e7be72c820504d1888 *R/diag_stability.R
01d97b22d07c937571d1243b1499913b *R/flag_headline.R
88644ad206d0123b1fa96b1f8eeb49da *R/io_diann.R
6fa6f73a7bbd01681f0bd9d0a7999ee0 *R/io_mokapot.R
8fd625bbc541f330258ca8cc00b0d814 *R/pi0_storey.R
30ea3084329047a0e57d58a3ee98b397 *R/plots.R
09c4a7d84ed4f24e25b90e5c212463ef *R/pvalue_helpers.R
c9f1d311afbaaa0471268deb631db6c0 *R/read_maxquant_msms.R
b3ffceb46869c04a0f5b5d653700dd06 *R/read_mzid.R
156d53dced2d9de6a636bfd1797fbb9c *R/read_spectronaut_normalEG.R
b812a618802409c368478a22ffa9b154 *R/render_report.R
61ba61cf5a7e411650e764c52f220fdf *R/report_write.R
0a560ed4096540db3e3780fb56b3721a *R/run_all.R
39f5a26722cfc16b06fc998640543ed6 *R/score_to_pvalue.R
657b66054c1a05047ffec2e10c1f93b5 *R/utils.R
a4a6a59f7892fe27fa5fccca40a05e83 *R/write_manifest.R
5fabd5a44f11bc3d88936f146490d726 *R/write_readme.R
f30f83cf61aeba186ab9ac3b7987db0a *R/write_report.R
d7a8cb3224200b2e292959b661f7884f *R/zzz.R
d1bbee67f72722c1e1aa6ccf92a48cdf *build/vignette.rds
5d54d2a080f8281f7482417d240175fd *inst/doc/diann.R
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7ad554c551f6bdbe06584faf8bdae4c2 *inst/doc/mzid.html
0f7fd095000e99905e801285cd48d645 *inst/doc/spectronaut.R
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4084705458669f0267d1d232c30dda47 *inst/templates/dfdr_report.Rmd
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e74fb81c01c5a259ff61e65698048406 *man/as_dfdr_tbl.Rd
6f699a7da9c364350572222724a35630 *man/choose_low_conf.Rd
fc0ff03368b0b51311ccf3949fdef3a7 *man/compete_max_score.Rd
8929b2edd0ab053b8929f4b83c34b16e *man/dfdr_bh_diagnostics.Rd
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9a6b6cc9f30ecaf118cf1cf709f5ee0c *man/dfdr_curve_stability.Rd
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7da4b4e92cb1a7bd328023fab70a8019 *man/dfdr_headline.Rd
609eb9a9ed47daf8c8f6d936c845c125 *man/dfdr_local_tail.Rd
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1f9a10ca4192f960c79f88fe43d0bfb8 *man/dfdr_pep_reliability.Rd
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5cbc9a5becc9b5b84e990c5f1fc1cbb5 *man/dfdr_plot_bh_elasticity.Rd
9e7a4d81fd20313c22eecc29bfe87091 *man/dfdr_plot_cv.Rd
7afa2c9a8a183d2c6b5df943df88fb56 *man/dfdr_plot_dalpha.Rd
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be07ac24d168be721726192d0cee9783 *man/dfdr_plot_p_calibration.Rd
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355e8b814085b31955327eea44e223fd *man/dfdr_plot_pep_reliability_tdc.Rd
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633084374def6537b3055b82906d9c3a *man/dfdr_plot_scope_disagreement_matrix.Rd
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7efa9fc81182c8f192be8b3deede3471 *man/dfdr_write_manifest.Rd
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986b5cc2a4c9775c395a9335fef97d66 *man/diann_detect_run_col.Rd
7307c35f76a6e582bea7c26c8237a2b1 *man/diann_global_minrunq.Rd
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48576594a1943232a96ac72d80d71885 *man/diann_runxprecursor.Rd
3cd6912fd396addd167ea152aad14b5e *man/dot-bh_threshold.Rd
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98f42035991777a6e7f8097ac7f20741 *man/jaccard_vec.Rd
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5d4ccda6900b44b83d8f19f34473c2e0 *man/tdc_qvalues.Rd
0d9412a1ce2c4f9ea7f0f83c539cfa2f *man/validate_dfdr_tbl.Rd
486851ef5b2ed6dfb82673ec76a37624 *man/wilson_ci.Rd
03f01f496dfed6ce269f6ffea73b9677 *vignettes/diann.Rmd
e03468f57eb223eb4d4ee88edd568372 *vignettes/maxquant.Rmd
132b7e83ee781335835491ffd4e3e784 *vignettes/mokapot.Rmd
f6a85d0407e176f1b72f250e86a9d3c3 *vignettes/mzid.Rmd
a016737fd522f2b4358fec3a9c06bdf2 *vignettes/spectronaut.Rmd
