218c6e1fc6455f527059c3672d927b57 *DESCRIPTION
c29a7a03a6d61e5bbc719bd37c29e03d *NAMESPACE
53d306e02ed9fce8e46af63f4bd84788 *NEWS.md
7d7f54476d8b034b5cbf3a4420f0028b *R/ML.RatePhylo.R
a079b7efd65c73ba24aa589b6add4433 *R/RData.R
d23c5815ebd84de6b02d55b97ac3d2ef *R/RDataTree.R
6605b96fcd2429b3f5d029cb2f2a1a21 *R/RData_finch_allopatric.R
71a6e4ab3d45b18e87d14c5fc5eb0ca0 *R/RData_finch_data.R
670f89adaa5df2a71812e58940db44c0 *R/RData_finch_sympatric.R
56ea9cce3c0f6f98646c28fdb011d4dc *R/RData_finch_tree.R
9db8980f96ca7f64ba872d2be2724b88 *R/RatePhylo.allCI.R
7d7e3d8250f51a1e439a25bb3992a81e *R/addFossilToPhy.R
dcaac193723889d2af00e6bfb6e7864c *R/as.rateData.R
cfa5744addd4e0cad965d0e8e3f4fbbd *R/as.rateMatrix.R
9841a90662ae40491744daa17ad05e52 *R/blomberg.k.R
4ad41b1abd5de757d4de0347aabad270 *R/calcCutOff.R
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1e2f05faec2b16a425e4deca6aa6c43a *R/chr.disp.sim.R
921b806aa3e7c6629a709222381db1e8 *R/chr.displacement_fun.R
bc19da3bc89546d2119a8e119dddd9b9 *R/contemporaryPhy.R
18aa214252f98f6f64e177b8b78d3831 *R/dropTipPartial.R
32f3831a1b61ca71d974afa767b039a4 *R/fairProportions.R
777555ea509daa3b3db96108bf4b9a61 *R/likRatePhylo.R
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63c478e0af18ddca446c580cf8ccbd37 *R/nodeTimes.R
563243daad327d377c65adc8f333e8b0 *R/optim.likRatePhylo.R
b9b740fa65f2fc030af2193c6ae49caa *R/package-motmot.R
3cb966067ce797b9eb97d6ee4afdc239 *R/phyloCovar.R
5c0b2e9b74ceaa6c283edbec8b1022e5 *R/phyloMean.R
4ad61880fc0803f9ceda1a83a9d0a629 *R/phyloVar.R
ab6a8b31a549bf00909d5a515f75d663 *R/pic.pgls.R
3c0cca28ead5268893482fd328ca653f *R/plot.timeSlice.ML.R
bd5c5302c4ee4e21770c70aec34b455c *R/plot.traitMedusa.model.R
0568096791c64993c89cac45ed8d30a8 *R/sampleShid.R
10271e9910f4abb8a8c2d773f9b0b4e6 *R/sortTraitData.R
648e44c68330a5001b017370c16fc58f *R/summary.traitMedusa.R
0a97f45210c33b0fd6f65ff0018dc336 *R/supplementary_fun.R
1205236674d2c6f7c7c8a42cd61be42a *R/traitData.plot.R
80ebc8e3f05c7546e6cd357c87fd58f4 *R/transformPhylo.MCMC.R
970d05fca6fac7c354e5421c0dd4a2f2 *R/transformPhylo.ML.R
ada1e0c2209af3ac80fa7232e160ca23 *R/transformPhylo.R
01132847cd5040babad934425d822ce5 *R/transformPhylo.ll.R
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16e727e91d2d9d99568bb68213ae8b03 *R/transformRateMatrix.R
b5dd816aff536d40fc3a65bd6c6075ad *README.md
ba582b375e5afde780e991c9b7711c6a *build/partial.rdb
7cbfc8bda55b56f8f7ab6386d5f62106 *build/vignette.rds
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53f52dfc184828a96cf64d23cede86f8 *data/finches.rda
50d3d14b1c0ac6d9501c08d8833ccf69 *inst/doc/motmot.vignette.R
857d8cc75133a8f7df302eae5e62e082 *inst/doc/motmot.vignette.Rmd
499dd152e0533e77b4eac66137712972 *inst/doc/motmot.vignette.html
0c12908983beba1777ab8183f0cb2a8d *man/ML.RatePhylo.Rd
f7df50fd1da594bcb2d23b6be7d22009 *man/RatePhylo.allCI.Rd
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461454de335f18c290d9e716be8a7bf1 *man/anolis.data.Rd
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340682ae96af48f5bb7b1d808f91d6d2 *man/as.rateData.Rd
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091f293ac24161655c1cca1daeb85f06 *man/chr.disp.sim.Rd
763a459f57db1a0abbf431b80963e937 *man/contemporaryPhy.Rd
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41d7d0180bc7f649c80c8af6fdf40bd6 *man/motmot-package.Rd
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9d9b68221e430ef853a2ca415be2c30d *man/nodeTimes.Rd
89c7a396eb14fb09824e92be1931981d *man/optim.likRatePhylo.Rd
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7b1bf47a9b42e244c7a4db303afe859e *man/sampleShid.Rd
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5a8f9537557fe6bc703a893c6516ac06 *man/sympatric.data.Rd
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4ca8c61ad2134eddb48b5b6fc8035650 *man/transformPhylo.MCMC.Rd
0e9d5abb6c681c82ed227921bbf1ee50 *man/transformPhylo.ML.Rd
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570732316b6a87a05bf9985f02aa4442 *man/transformPhylo.ll.Rd
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83493d5b2265709cbe9a9d03d35bbc60 *man/transformRateMatrix.Rd
0308d2c5db869f404ac51089c8fa9d37 *src/Rfunc.cpp
13a86b06f8c3f5120c9e1f070870f38e *src/packagename_init.c
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53e8f41570af8c12d6e5cdb0e8696954 *src/tree.cpp
e27de0087b6e469998b53e2dfb57bac9 *src/tree.h
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857d8cc75133a8f7df302eae5e62e082 *vignettes/motmot.vignette.Rmd
