86b59aadc1df592f60dbc73ce1092b81 *DESCRIPTION
9ab3a38621447c8a21a72fd66372f4e0 *NAMESPACE
4fc8f35b71213c2aeddeea6a62aa448d *NEWS
000f826996542f9528e0b6d1569fe34b *R/RcppExports.R
7d791febab7b24546c04a414a72c0ba4 *build/vignette.rds
7fc1471a2d4e9c617dcc595a9157a7c0 *inst/CITATION
6d8cb7d3a2b0ceabd79405130a4fd2f9 *inst/doc/jmatrixsc.R
7ccc966b620150c03a10dd0ad0a6d4cd *inst/doc/jmatrixsc.Rmd
b1128dfc6870b6bfd9229b01d60aed31 *inst/doc/jmatrixsc.html
4ee9f258ea87dde42ead575524494ee3 *inst/doc/parallelpamsc.R
47cdb05fcecbd5a6db98a20f85d1baf6 *inst/doc/parallelpamsc.Rmd
10888f2b88e74d967da44e71676d11fb *inst/doc/parallelpamsc.html
58f3230d87c36896e97a054b0e44df20 *inst/doc/scellpam.R
a6a6eaaa884bc915f5d5f5304e98f0ec *inst/doc/scellpam.Rmd
f260b1178ef7793bcff34f7a2f825f5f *inst/doc/scellpam.html
cffa85e10841b0c47ec990f5b9ce9f2e *inst/include/closecases.h
3ac15e1a60a0f6cabac5f8c73aa9bccd *inst/include/debugpar.h
b7d4e487db41a240fb821aff1681524c *inst/include/diftimehelper.h
ffab003a6e32a19eec4971bb1a79050d *inst/include/dissimmat.h
32df6f28ec0288f4d3548d9604eec9d5 *inst/include/fastpam.h
82c0a7d5b88f05d8146c522c882b50d6 *inst/include/filtermat.h
75c7542799151eec4c8a5bb4e8855e45 *inst/include/fullmatrix.h
7e42b7d9d29502d1b0ff991a38c151c9 *inst/include/jmatrix.h
9e3ae907bd1b596e82e73b854a06ddd4 *inst/include/matmetadata.h
88b4a2bd69bd4a7590c5e65061f20850 *inst/include/memhelper.h
c77cbe89d1474ab5a16a747a0c069c1a *inst/include/silhouette.h
e3ce67dbe0226eb5ca75cb12d88c0055 *inst/include/sparsematrix.h
64ecaeaf01db6edb9e41e195b66e1f39 *inst/include/symmetricmatrix.h
af8af0d4d5d52892def11b0194b98853 *inst/include/templatemacros.h
e453255e14e21f7626a98e94d01fcf27 *inst/include/threadhelper.h
7cd36d780474250ee959040cb95c60d8 *man/ApplyPAM.Rd
1302b44ef1d1207371069f3e7fce9507 *man/BuildAbundanceMatrix.Rd
6a758680742ae135fbd76a9d598e453a *man/CalcAndWriteDissimilarityMatrix.Rd
85b2122ccb3eb30afd3f0e409c94deed *man/CalculateSilhouette.Rd
35991fe6d8ad9ead5ef3b0655c5a2889 *man/ClassifAsDataFrame.Rd
6b71e142505823aa1c58764722bb0abd *man/ClosestCases.Rd
845bd0fab099209d7ad653ae4bbd9bba *man/CsvToJMat.Rd
2a6d14aa58e50429e37e98f6e1e5d13a *man/ExtractAndWriteDissimilarityMatrix.Rd
3edcc06c83e4afd5271e2f51fbe075e3 *man/FilterBySilhouetteQuantile.Rd
0c26089b6fa1cf453e1331cbb0b5c42d *man/FilterBySilhouetteThreshold.Rd
4ed6ebfe464c19b095406576b9975446 *man/FilterJMatByName.Rd
08d218f1d393f3a143a01684ab18cda3 *man/GetJCol.Rd
d464a3939561659e626f13f8e0e7ae14 *man/GetJColByName.Rd
6199d02d2d44ec453346eac6b9a5e2c8 *man/GetJColNames.Rd
850a9d56fc3836588238eef03f9d6b6e *man/GetJManyCols.Rd
620b8a55e158d3eb3273ac713d65252b *man/GetJManyColsByNames.Rd
c39de862e884cc59f3809f3ce349c0bd *man/GetJManyRows.Rd
991f8ff115a2b8c662521f0e586f033a *man/GetJManyRowsByNames.Rd
852af628d0b271d04aaf99db78b5efde *man/GetJNames.Rd
b93b75cf0f3d0e2d99778635ef551921 *man/GetJRow.Rd
342074145dbc130a6baece3523593302 *man/GetJRowByName.Rd
37d880ca345da2097cc7288a1338ec2e *man/GetJRowNames.Rd
e877b9bd64d95a5f3590f065a6de79b9 *man/GetSeuratGroups.Rd
6b1d6eb3d3f2fe76f4b600edc1378a0b *man/GetSubdiag.Rd
0d9ebfd49b87319199d925ba045b7272 *man/GetTD.Rd
5d4ee21256183eaf61dacf1ad5dd4697 *man/JMatInfo.Rd
777f6700090835d772051a9d35d0da46 *man/JMatInfoList.Rd
3c7e59b1a894563f7c0140ef20142ee1 *man/JMatToCsv.Rd
033b4915dee9ac5d560f46c1df9523b3 *man/JWriteBin.Rd
d1bf6d8d67d5fd5a61e5ac60b84e625b *man/NumSilToClusterSil.Rd
9312e3cfc349118d495fab8d15e9e5fd *man/SceToJMat.Rd
63df2bc14fc96a5ec34e1794e831d6bf *man/ScellpamGetDebug.Rd
3183361d938aa858c5524cc46026ee9c *man/ScellpamSetDebug.Rd
d823757326707a5335d10ab66d9c52d6 *man/dgCMatToJMat.Rd
7b93da85af7f02f533a8ac768833ded5 *src/Makevars
4ab9f852280b2bd00835ee7e6c86ebac *src/RcppExports.cpp
1004780074734625b8d6ca84eb85ddab *src/biodatatojmat.cpp
0c79b1c4cacb141747699af7e69b249b *src/buildresults.cpp
7bc8effb1dde31e784a9ccf70168518d *src/closecases.cpp
d573ebf14a696ae7c5fa681bfcf40b87 *src/csvtojmat.cpp
4b98ddbc0beed5c3b169780fa46becc3 *src/debugpar.cpp
4d1e965f323b36898d67ad3c7c061196 *src/diftimehelper.cpp
e3c44df71eab7cc5a080a10aafbe7796 *src/dissimmat.cpp
e967f7a7eb74e97437e53d1e55bcbd62 *src/dissimmat_full.cpp
c269c3e09a72aa9e133530bb3874445b *src/dissimmat_sparse.cpp
3a9ec7c6deb5ad421255d69b61c68ed8 *src/fastpam.cpp
c619b287e8ad672783772a5b96f7a962 *src/filtermat.cpp
bace61237750ce0c9c7837cd5fa8e309 *src/filternames.cpp
58be1b9f39533b027410571187cf79fe *src/filtersil.cpp
4b8d384a1a1fcd3d34c3f1453b2bf28d *src/fullmatrix.cpp
3792119b59afe55978a5792e7ef4396f *src/jmatrix.cpp
c6f4cc901ac914e095e8966a7001b30a *src/jmatrixaux.cpp
5d00ea40dc10392bff3b8176afa920a4 *src/mainfastpam.cpp
f4d56bb455fe2606a4b7b2608ecbec03 *src/matgetcols.cpp
8bc37a8b64b1b1de09c201be16ba9964 *src/matgetdiag.cpp
d86aba5d7e86df1012f745cb195e40d8 *src/matgetrows.cpp
3f25df09d72438eee757d3170c84f24c *src/matinfo.cpp
b3d89a6bb970abd478acb9d2bb518e61 *src/matmetadata.cpp
7c3859f609734aba009aa60af45fbeb0 *src/matwrite.cpp
b339bb541babb582c92a616c533fec3b *src/memhelper.cpp
77659db0aea5527579588da8fdd14f3e *src/silhouette.cpp
c6835d172e278d7612afa75749d4ad8c *src/sparsematrix.cpp
d3951275500315e1c12363e9a70b0081 *src/symmetricmatrix.cpp
2aa559235e627e27f9a0076f14d94395 *src/threadhelper.cpp
e273aaff15de6c63e649a5ffc20bc442 *vignettes/extdata/Trapnell_remain_genes.csv
f93611dd960ef5b1e6eeeaaee2e8df5b *vignettes/extdata/conquer_GSE52529_Trapnell_sample.csv
7ccc966b620150c03a10dd0ad0a6d4cd *vignettes/jmatrixsc.Rmd
47cdb05fcecbd5a6db98a20f85d1baf6 *vignettes/parallelpamsc.Rmd
a6a6eaaa884bc915f5d5f5304e98f0ec *vignettes/scellpam.Rmd
a2255817c88dfb169bbd470143cb97c3 *vignettes/scellpam.bib
