7aa75996c3487baea5d4d4837b63e88e *DESCRIPTION
55386e9facfd7172e6f673233a13259c *NAMESPACE
118fecdd442eaa6d5a0a98805384280d *R/AAmass.R
898564612aa8b31966717cdb9cd830dc *R/AucRoc.R
072675e7e745acfa48cb80b7a8f91928 *R/VolcanoPlotW2.R
2d76e911e56899b442f5f78419775c3e *R/cleanListCoNames.R
59452cdaeda25b2111c14a469d8883c9 *R/combineMultFilterNAimput.R
383de41787cf0e7b938640e9dbcb494e *R/convAASeq2mass.R
1c43500d88254939b61cd7f5bd82ef0d *R/corColumnOrder.R
8c4f928a3cb71907ad0e0e553bd9624a *R/countNoOfCommonPeptides.R
2245fb3cd526a8d6d459b372f0a2dc26 *R/exportAsWombatP.R
65a45011a7ea9e29f8f58330594660e8 *R/exportSdrfDraft.R
33a441d8fafd5276b291787bdf8f1ec5 *R/extrSpeciesAnnot.R
b250a914b4853f90b910ce144c3c5512 *R/extractTestingResults.R
09ececfb51c961ce9f5ab17e8c5893f1 *R/foldChangeArrow2.R
5668cc1d3ee0cdd469ff6aef7ee67d1b *R/fuseProteomicsProjects.R
890cb64dc8599f12f7384bbd86b9e0bb *R/getUPS1acc.R
17176effa831902656c6933279dd8e1b *R/inspectSpeciesIndic.R
7ccd8f69e611ec958783a02e9884e224 *R/isolNAneighb.R
43ae4cd8b72bc046520f801cc27b686f *R/massDeFormula.R
03881a292ba62e12485bb12a8c391f94 *R/matrixNAinspect.R
c7ed53ad9b6e330beeb2a1ab0f7b7af5 *R/matrixNAneighbourImpute.R
398077348e4df92dca9ee2f176bb7cf7 *R/plotROC.R
ac0a348fc261b369252d02c653d5747f *R/razorNoFilter.R
d4072b598b22caa404de129cf35460d9 *R/readAlphaPeptFile.R
2ae084f05fd0611e4771bb4860232f08 *R/readDiaNNFile.R
2d1937baba382d01635200932d5bbca4 *R/readDiaNNPeptides.R
83f48797621a1002fccb7cd1078a130b *R/readFasta2.R
d1290417f2e0248473aa98d4e74f76d4 *R/readFragpipeFile.R
e610fbc62d5a4cd754aa259507f9461d *R/readIonbotPeptides.R
6df792f3772bc65ad1d4e3edc3dc2af4 *R/readMassChroQFile.R
69aad8d7f6bda96f02170e072fdf101e *R/readMaxQuantFile.R
2d69b876e9e6af8ac1d9a66a04de6c39 *R/readMaxQuantPeptides.R
29f56e457a6935c9f81b1de3fd6e9c84 *R/readOpenMSFile.R
44a2a2091b41594639f9269310165e4a *R/readProlineFile.R
b354cb71a6ff96096e5e4c2dc96924c0 *R/readProtDiscovFile.R
ea8f89c173200b480787ba5c946fa861 *R/readProteomeDiscovererFile.R
ad2d13597c5208ef6679371f99905b0d *R/readProteomeDiscovererPeptides.R
054dabe55c4fafd38374095bfb57dca9 *R/readSampleMetaData.R
6297c0a1a3a03f9ff7ae2c53aafb4120 *R/readSdrf.R
a2cdb0309559df963393e43a7cf21fa6 *R/readUCSCtable.R
d8be2fbb094accd7ba4c932dc47a506c *R/readUniProtExport.R
b9f5202a9d84278cbad0c62178e4622b *R/readWombatNormFile.R
22393602d35840995ea896558d8b5c50 *R/removeSampleInList.R
cde6427b5286c9adc340153ac5e41512 *R/replMissingProtNames.R
7a11962c10d8bfec0dda14ecc755861e *R/shortSoftwName.R
39da7b8c5a549e45b923c851ef3c4ecd *R/summarizeForROC.R
21d2f327b62b8a40397d7765e38dbc05 *R/test2grp.R
61657a2cd89167df3d9225f431e53645 *R/testRobustToNAimputation.R
c742c4429a389d4798e1fd5996f0e37e *R/writeFasta2.R
e69bed1bf8f1707bbf2a4e438bfa01ea *build/vignette.rds
717b76076bae470ae4b8b63bdce12936 *inst/doc/wrProteoVignette1.R
31d5f03434d09636a6978be62771878a *inst/doc/wrProteoVignette1.Rmd
a6c5da9cf8c854355f16f9e54437aefa *inst/doc/wrProteoVignette1.html
06d90e6293ccfb5f9251a8382cee2d65 *inst/doc/wrProteoVignetteUPS1.R
ac308f9db4b0a82505f2836de08dcb02 *inst/doc/wrProteoVignetteUPS1.Rmd
a08d4449514373decfbf24cf8cfcd3f7 *inst/doc/wrProteoVignetteUPS1.html
5a36dae79d2427c12f424b7b63273b63 *inst/extdata/OpenMS_tiny.csv.gz
fa4ddbca3647427a25de3ca91325b01d *inst/extdata/UCSC_hg38_chr11extr.gtf.gz
ff1a130752c828e6b2862351097e9a50 *inst/extdata/conta1.fasta.gz
ecce9c03a56859d9d2e35f6a8c7ac3c7 *inst/extdata/deUniProt_hg38chr11extr.tab
fd088c93fc9d4ce11d75cdccb3e51fcf *inst/extdata/exampleProlineABC.csv.gz
ef3a127cb7bd36499883856839d3b989 *inst/extdata/exampleProtDiscov1.txt.gz
3339337d25ff8813704da6921997476e *inst/extdata/parameters.txt.gz
c3cbb00e063cbb974e7f197a076c512d *inst/extdata/peptides_tinyMQ.txt.gz
903b0a68307c4e9541c89ecd39941cfe *inst/extdata/proteinGroups.txt.gz
359b295c744d24f3af38275d661c6e59 *inst/extdata/proteinGroupsMaxQuant1.txt.gz
393f403f2829db9fe4ff28794a423633 *inst/extdata/pxd001819_PD24_Proteins.txt.gz
a91db83677978169a0576c7a4ca3e749 *inst/extdata/pxd001819_PD_InputFiles.txt.gz
cfc7e9ff9779723c2871262ce1ebac39 *inst/extdata/pxd001819_PL.xlsx
5244b011e37cd5fc0a53ec480d01c3b8 *inst/extdata/summary.txt.gz
93859d51bffe2efb895868be9dbf44f2 *inst/extdata/tinyAlpaPeptide.csv.gz
a858b4ba772436fc08a9e7fcd22cb051 *inst/extdata/tinyDiaNN1.tsv.gz
16d4e227fb74166e15d9ef132aaf9daa *inst/extdata/tinyFragpipe1.tsv.gz
0c1fe9bb56555312715f0a8928458974 *inst/extdata/tinyIonbotFile1.tsv.gz
bf47bf530aa4861f0cc3aa05c7420091 *inst/extdata/tinyMC.RData
4ce3b64b9a16c21aebb640440016c6d3 *inst/extdata/tinyPD_allProteins.txt.gz
81843f6d0972828d6e4ee28b02357c8f *inst/extdata/tinyWombCompo1.csv.gz
d304e0b6672110cb2d1ea1de5752908d *man/AAmass.Rd
d7babe939a57c9c86fa155812381e969 *man/AucROC.Rd
7f7a04a4bcace1c3c5685a0eea27e282 *man/VolcanoPlotW2.Rd
308a97c8289e6316fd3d69d18a23dcce *man/cleanListCoNames.Rd
63a4ba6562e49cc8fd6be358f25ead5f *man/combineMultFilterNAimput.Rd
4fefb1ef323348a877478cd1a506f373 *man/convAASeq2mass.Rd
963407e22ab566288566ca4e3e82a4e2 *man/corColumnOrder.Rd
6d22397ca5d82f3ea32d9908795525ab *man/countNoOfCommonPeptides.Rd
7aa8f38724d98c790cd7e13de57b936f *man/dot-atomicMasses.Rd
e84440c1cd38d837a13c2e80082d5cf2 *man/dot-checkKnitrProt.Rd
f78b68f598f10fddcb33e426dcec6c7a *man/dot-checkSetupGroups.Rd
dcf2fc0f595d624c97f483cd50bd6c71 *man/dot-commonSpecies.Rd
a3f64b99d428e7a853bf56d61fdafa5c *man/dot-extrSpecPref.Rd
d0b8063f9e3e97168a49863d8c7d790d *man/dot-imputeNA.Rd
45937bd73cc0479b193b655c04b3245d *man/dot-parseFastaHeader.Rd
4d7c5b24db02155e29a0fd4c7d441a28 *man/dot-plotQuantDistr.Rd
b5c1c1c1d47076813345970857d6def9 *man/exportAsWombatP.Rd
71b9cd0941b88a8fb14ceec33fa522ef *man/exportSdrfDraft.Rd
d882966f436b7a20e61c8bd917aa75cb *man/extrSpeciesAnnot.Rd
2ccfe519c89c7e20b313bd05dca8c8ba *man/extractTestingResults.Rd
8b0d38bcb385e03d56038f7ccc3b98e4 *man/foldChangeArrow2.Rd
09ec59606065a2afe238cbc12ce4f5c9 *man/fuseProteomicsProjects.Rd
705b70ce5c4a0bbbc07625714b21cc2b *man/getUPS1acc.Rd
f2352e157497586caaa5cb739605241d *man/inspectSpeciesIndic.Rd
115f92c8b0c2ef3c3cc1d24289542ee4 *man/isolNAneighb.Rd
1409eac1ed4166a707be5a308442fa1d *man/massDeFormula.Rd
ec36b5e3b27f322f79596fb04a5bae6b *man/matrixNAinspect.Rd
c7b1366e0221308a01353473fd925caa *man/matrixNAneighbourImpute.Rd
1a12d17f8d611df731256e020b853c3f *man/plotROC.Rd
d01daf4c32f167ee6e81da8f900613dd *man/razorNoFilter.Rd
7515f8326c3d66486cc149a5af88a15d *man/readAlphaPeptFile.Rd
d355e40c5b16f86633a35998146dcdbf *man/readDiaNNFile.Rd
4786b0682ba41183da41de123a804f34 *man/readDiaNNPeptides.Rd
cefc79136c01c3cabca2cf4e663406d5 *man/readFasta2.Rd
28c2846bc58358273bd750da6b9853f6 *man/readFragpipeFile.Rd
38e10035760830127176dc8ba64a138a *man/readIonbotPeptides.Rd
c7ba82b98c8ecceb43363d5e35246a6c *man/readMassChroQFile.Rd
8079588184e30736152108a0a14c6694 *man/readMaxQuantFile.Rd
ce6877ad7d49a5e957faed88fbfcee8c *man/readMaxQuantPeptides.Rd
bd7a4ac97771ae4f529cf1c218fb04ea *man/readOpenMSFile.Rd
d692e940731532a4e05bb3ce4f6abf9c *man/readProlineFile.Rd
ff424b78ce31b595cafa1ba6d4355722 *man/readProtDiscovFile.Rd
c9931bb6d03348c4bba0418dd9481a24 *man/readProtDiscovererPeptides.Rd
22e2896d2f2737b51df3614d7ef850ae *man/readProteomeDiscovererFile.Rd
5bb64f316d45e470c3aabf732767751a *man/readProteomeDiscovererPeptides.Rd
5ac79c15529015a99265aa811374a587 *man/readSampleMetaData.Rd
a794aaedafc4ea3ef03cd7a5277db4d8 *man/readSdrf.Rd
df9fe52496078623bfe20a8dd14daf4c *man/readUCSCtable.Rd
6f7a99e54c739048470cc9a0bcd3ece2 *man/readUniProtExport.Rd
35b376962f6f6471f6dc6d1d8ae79f94 *man/readWombatNormFile.Rd
edc90abc05c7f106182d395d594d8329 *man/removeSampleInList.Rd
efe6c98d3f55dd908781c4bb0423eb4f *man/replMissingProtNames.Rd
c70c6ad888b8a63a3f73abc41532a4c2 *man/shortSoftwName.Rd
1321b07b27919e346fbc369041da241f *man/summarizeForROC.Rd
ba009c8308b27e0c88c34c2c18f99009 *man/test2grp.Rd
1895fb872dc88f3e6f4947510dd0fe0b *man/testRobustToNAimputation.Rd
9989eb1c442fa9665185250f86224ce4 *man/writeFasta2.Rd
31d5f03434d09636a6978be62771878a *vignettes/wrProteoVignette1.Rmd
ac308f9db4b0a82505f2836de08dcb02 *vignettes/wrProteoVignetteUPS1.Rmd
