CRAN Package Check Results for Package MetabolomicsBasics

Last updated on 2024-12-21 07:50:23 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.5 17.73 143.88 161.61 ERROR
r-devel-linux-x86_64-debian-gcc 1.4.5 11.43 102.30 113.73 OK
r-devel-linux-x86_64-fedora-clang 1.4.5 269.38 OK
r-devel-linux-x86_64-fedora-gcc 1.4.5 257.04 OK
r-devel-windows-x86_64 1.4.5 18.00 150.00 168.00 OK
r-patched-linux-x86_64 1.4.5 14.42 143.40 157.82 OK
r-release-linux-x86_64 1.4.5 15.79 144.81 160.60 OK
r-release-macos-arm64 1.4.5 75.00 OK
r-release-macos-x86_64 1.4.5 129.00 OK
r-release-windows-x86_64 1.4.5 18.00 156.00 174.00 OK
r-oldrel-macos-arm64 1.4.5 87.00 NOTE
r-oldrel-macos-x86_64 1.4.5 161.00 NOTE
r-oldrel-windows-x86_64 1.4.5 24.00 192.00 216.00 OK

Additional issues

noSuggests

Check Details

Version: 1.4.5
Check: examples
Result: ERROR Running examples in ‘MetabolomicsBasics-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ReplaceMissingValues > ### Title: ReplaceMissingValues. > ### Aliases: ReplaceMissingValues > > ### ** Examples > > # load raw data and sample description > raw <- MetabolomicsBasics::raw > sam <- MetabolomicsBasics::sam > > idx <- apply(raw, 2, CheckForOutliers, group = sam$GT, n_sd = 5, method = "logical") > sum(idx) # 215 values would be classified as outlier using a five-sigma band [1] 215 > old_vals <- raw[idx] # keep outlier values for comparison > raw_filt <- raw > raw_filt[idx] <- NA > raw_means <- apply(raw, 2, function(x) { + sapply(split(x, sam$GT), mean, na.rm = TRUE)[as.numeric(sam$GT)] + })[idx] > raw_repl <- ReplaceMissingValues(x = raw_filt) Error in verify_suggested("mixOmics") : The use of this function requires packagemixOmics. Please install. Calls: ReplaceMissingValues -> verify_suggested Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed CheckForOutliers 3.846 0.048 5.572 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.4.5
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ropls', 'xcms' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64