CRAN Package Check Results for Package cellpypes

Last updated on 2024-04-22 08:51:18 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.0 13.09 111.44 124.53 ERROR
r-devel-linux-x86_64-debian-gcc 0.3.0 9.25 96.46 105.71 OK
r-devel-linux-x86_64-fedora-clang 0.3.0 188.04 OK
r-devel-linux-x86_64-fedora-gcc 0.3.0 175.13 OK
r-prerel-macos-arm64 0.3.0 51.00 OK
r-prerel-macos-x86_64 0.3.0 118.00 OK
r-prerel-windows-x86_64 0.3.0 10.00 108.00 118.00 OK
r-patched-linux-x86_64 0.3.0 7.60 127.09 134.69 OK
r-release-linux-x86_64 0.3.0 7.16 129.52 136.68 OK
r-release-macos-arm64 0.3.0 54.00 OK
r-release-macos-x86_64 0.3.0 111.00 OK
r-release-windows-x86_64 0.3.0 13.00 134.00 147.00 OK
r-oldrel-macos-arm64 0.3.0 56.00 OK
r-oldrel-windows-x86_64 0.3.0 13.00 142.00 155.00 OK

Check Details

Version: 0.3.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘DESeq2’ Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cellpypes) > > test_check("cellpypes") [ FAIL 2 | WARN 5 | SKIP 0 | PASS 53 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-pseudobulk.R:10:3'): class_to_deseq2 example working ───────── `{ ... }` threw an unexpected error. Message: Install DESeq2 to use class_to_deseq2 function. Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-pseudobulk.R:10:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─cellpypes::class_to_deseq2(obj, meta_data, "T", ~treatment) at test-pseudobulk.R:20:7 ── Error ('test-pseudobulk.R:61:3'): class_to_deseq2 stops gracefully if class has zero cells. ── Error in `class_to_deseq2(dds, meta_data, "T", ~treatment)`: Install DESeq2 to use class_to_deseq2 function. Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-pseudobulk.R:61:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─cellpypes::class_to_deseq2(dds, meta_data, "T", ~treatment) [ FAIL 2 | WARN 5 | SKIP 0 | PASS 53 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang