Last updated on 2025-12-07 07:49:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2-22 | 15.39 | 211.87 | 227.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.2-22 | 10.85 | 137.22 | 148.07 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.2-22 | 30.00 | 322.73 | 352.73 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.2-22 | 35.00 | 319.22 | 354.22 | OK | |
| r-devel-windows-x86_64 | 2.2-22 | 20.00 | 182.00 | 202.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 2.2-22 | 15.46 | 204.45 | 219.91 | OK | |
| r-release-linux-x86_64 | 2.2-22 | 15.37 | 203.57 | 218.94 | OK | |
| r-release-macos-arm64 | 2.2-22 | OK | ||||
| r-release-macos-x86_64 | 2.2-22 | 16.00 | 233.00 | 249.00 | OK | |
| r-release-windows-x86_64 | 2.2-22 | 21.00 | 159.00 | 180.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 2.2-22 | OK | ||||
| r-oldrel-macos-x86_64 | 2.2-22 | 21.00 | 312.00 | 333.00 | OK | |
| r-oldrel-windows-x86_64 | 2.2-22 | 26.00 | 167.00 | 193.00 | OK | --no-vignettes |
Version: 2.2-22
Check: tests
Result: ERROR
Running ‘brfit.R’ [2s/2s]
Running ‘lmekin1.R’ [3s/3s]
Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK
Running ‘lmekin2.R’ [2s/2s]
Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK
Running ‘nest1.R’ [2s/2s]
Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK
Running ‘nest2.R’ [2s/2s]
Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK
Running ‘refine.R’ [2s/2s]
Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK
Running ‘refine1.R’ [2s/2s]
Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK
Running ‘refine2.R’ [2s/2s]
Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK
Running ‘refine3.R’ [2s/2s]
Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK
Running ‘shrink.R’ [2s/2s]
Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK
Running ‘slope1.R’ [8s/9s]
Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK
Running ‘slope2.R’ [3s/3s]
Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK
Running ‘slope3.R’ [3s/3s]
Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK
Running ‘slope4.R’ [6s/7s]
Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK
Running ‘strata1.R’ [2s/2s]
Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK
Running ‘test0.R’ [2s/2s]
Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK
Running ‘test1.R’ [2s/2s]
Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK
Running ‘test2.R’ [2s/2s]
Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK
Running ‘test3.R’ [2s/2s]
Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK
Running ‘test4.R’ [2s/2s]
Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK
Running ‘twoterm.R’ [2s/2s]
Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
Running the tests in ‘tests/brfit.R’ failed.
Complete output:
> library(coxme)
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: 'bdsmatrix'
The following object is masked from 'package:base':
backsolve
> options(na.action=na.omit)
>
> # This data set comes from a family study, where there were doubts about
> # the correctness of the lmekin fit. (Courtesy M deAndrade)
> # It's a good test of several things: there are missing values, and the
> # data is not in family order
> load('brdat.rda')
>
> library(kinship2)
Error in library(kinship2) : there is no package called 'kinship2'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2-22
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘coxme.Rnw’ using Sweave
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
Error: processing vignette 'coxme.Rnw' failed with diagnostics:
chunk 6
Error in library(kinship2) : there is no package called ‘kinship2’
--- failed re-building ‘coxme.Rnw’
--- re-building ‘laplace.Rnw’ using Sweave
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
--- finished re-building ‘laplace.Rnw’
--- re-building ‘lmekin.Rnw’ using Sweave
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
Loading required package: nlme
Loading required package: kinship2
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘kinship2’
Error: processing vignette 'lmekin.Rnw' failed with diagnostics:
chunk 4 (label = gaw)
Error in pedigree(id, father, mother, sex = sex, famid = famid) :
could not find function "pedigree"
--- failed re-building ‘lmekin.Rnw’
--- re-building ‘variance.Rnw’ using Sweave
Loading required package: coxme
Loading required package: survival
Loading required package: bdsmatrix
Attaching package: ‘bdsmatrix’
The following object is masked from ‘package:base’:
backsolve
--- finished re-building ‘variance.Rnw’
SUMMARY: processing the following files failed:
‘coxme.Rnw’ ‘lmekin.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc