Last updated on 2026-04-10 08:51:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.0 | 1.74 | 38.79 | 40.53 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.6.0 | 1.48 | 32.19 | 33.67 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.6.0 | 53.60 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6.0 | 54.30 | NOTE | |||
| r-devel-macos-arm64 | 0.6.0 | 1.00 | 24.00 | 25.00 | NOTE | |
| r-devel-windows-x86_64 | 0.6.0 | 4.00 | 57.00 | 61.00 | NOTE | |
| r-patched-linux-x86_64 | 0.6.0 | 1.82 | 27.11 | 28.93 | ERROR | |
| r-release-linux-x86_64 | 0.6.0 | 1.67 | 34.06 | 35.73 | NOTE | |
| r-release-macos-arm64 | 0.6.0 | NOTE | ||||
| r-release-macos-x86_64 | 0.6.0 | 1.00 | 45.00 | 46.00 | NOTE | |
| r-release-windows-x86_64 | 0.6.0 | 3.00 | 59.00 | 62.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.6.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.6.0 | 1.00 | 43.00 | 44.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.0 | 3.00 | 66.00 | 69.00 | OK |
Version: 0.6.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘ggmugs.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [9s/101s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ggmugs)
>
> test_check("ggmugs")
Loading study1...
Loading study2...
Saving _problems/test-ggmugs-12.R
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ggmugs.R:2:3'): ggmugs works ───────────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(input_files, function(x) { message(paste0("Loading ", x[["study_name"]], "...\n")) d = data.table::fread(x[["summary_stat"]]) d[["study_name"]] = x[["study_name"]] d[["chr_pos"]] = paste0(d[["chr"]], "_", d[["pos"]]) d[["logp"]] = -log(d[["p"]], 10) d = dplyr::arrange(d, chr, pos, dplyr::desc(logp)) d = dplyr::distinct(d, chr_pos, .keep_all = TRUE) d = dplyr::select(d, chr, pos, chr_pos, logp, study_name) return(d) })`: i In index: 2.
i With name: study2.
Caused by error in `download.file()`:
! download from 'https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat2.txt' failed
Backtrace:
▆
1. ├─ggmugs::ggmugs(...) at test-ggmugs.R:2:3
2. │ └─purrr::map(...)
3. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
4. │ ├─purrr:::with_indexed_errors(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ ├─purrr:::call_with_cleanup(...)
7. │ └─ggmugs (local) .f(.x[[i]], ...)
8. │ └─data.table::fread(x[["summary_stat"]])
9. │ └─utils::download.file(...)
10. └─base::.handleSimpleError(...)
11. └─purrr (local) h(simpleError(msg, call))
12. └─cli::cli_abort(...)
13. └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64