Last updated on 2025-12-07 07:49:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.3 | 33.40 | 164.65 | 198.05 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.5.3 | 22.81 | 96.95 | 119.76 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.3 | 285.00 | 79.99 | 364.99 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.5.3 | 269.00 | 82.74 | 351.74 | ERROR | |
| r-devel-windows-x86_64 | 0.5.3 | 41.00 | 187.00 | 228.00 | OK | |
| r-patched-linux-x86_64 | 0.5.3 | 31.57 | 162.23 | 193.80 | NOTE | |
| r-release-linux-x86_64 | 0.5.3 | 34.02 | 163.51 | 197.53 | ERROR | |
| r-release-macos-arm64 | 0.5.3 | OK | ||||
| r-release-macos-x86_64 | 0.5.3 | 17.00 | 133.00 | 150.00 | OK | |
| r-release-windows-x86_64 | 0.5.3 | 40.00 | 190.00 | 230.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.3 | OK | ||||
| r-oldrel-macos-x86_64 | 0.5.3 | 17.00 | 108.00 | 125.00 | OK | |
| r-oldrel-windows-x86_64 | 0.5.3 | 48.00 | 256.00 | 304.00 | ERROR |
Version: 0.5.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Emil Hvitfeldt <emilhhvitfeldt@gmail.com>’
The Description field contains
(2016) <arXiv:1602.04938>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.5.3
Check: for unstated dependencies in ‘demo’
Result: NOTE
'library' or 'require' calls not declared from:
‘data.table’ ‘magrittr’ ‘purrr’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.5.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'covr', 'knitr', 'rmarkdown', 'keras', 'htmlwidgets'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.3
Check: examples
Result: ERROR
Running examples in ‘lime-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_text_explanations
> ### Title: Plot text explanations
> ### Aliases: plot_text_explanations
>
> ### ** Examples
>
> # We load a precalculated explanation set based on the procedure in the ?lime
> # examples
> explanations <- .load_text_example()
>
> # We see that the explanations are in the expected format
> print(explanations)
model_type case label label_prob model_r2 model_intercept feature
in classification 1 1 0.6418385 0.9879563 0.3321225 in
we classification 1 1 0.6418385 0.9879563 0.3321225 we
in1 classification 2 1 0.8022363 0.8551634 0.3210651 in
We classification 2 1 0.8022363 0.8551634 0.3210651 We
those classification 3 0 0.5432571 0.8868849 0.6909923 those
we1 classification 3 0 0.5432571 0.8868849 0.6909923 we
in2 classification 4 1 0.8719526 0.6569822 0.4941383 in
Section classification 4 1 0.8719526 0.6569822 0.4941383 Section
of classification 5 1 0.7316587 0.3242455 0.3535088 of
our classification 5 1 0.7316587 0.3242455 0.3535088 our
feature_value feature_weight feature_desc
in in -0.03694821 in
we we 0.34825310 we
in1 in -0.01236806 in
We We 0.42784027 We
those those 0.07281582 those
we1 we -0.26484904 we
in2 in 0.01006400 in
Section Section 0.33433000 Section
of of 0.01377475 of
our our 0.28981386 our
data
in we validate them in section and conclude in section
we we validate them in section and conclude in section
in1 We developed a two-level machine learning approach that in the first level considers two different properties important for protein-protein binding derived from structural models of V3 and V3 sequences.
We We developed a two-level machine learning approach that in the first level considers two different properties important for protein-protein binding derived from structural models of V3 and V3 sequences.
those specifically we hypothesize that the judgments of those individuals high in this trait will be more influenced by previously presented anchors whereas those individuals low in this trait will be less influenced by the anchor
we1 specifically we hypothesize that the judgments of those individuals high in this trait will be more influenced by previously presented anchors whereas those individuals low in this trait will be less influenced by the anchor
in2 Finally, in Section we discuss the results and give conclusions
Section Finally, in Section we discuss the results and give conclusions
of We also illustrate the application of our SYMBOL -mixing generalization bounds to general classes of learning algorithms, including Support Vector Regression (SVR) CITATION , Kernel Ridge Regression CITATION , and Support Vector Machines (SVMs) CITATION
our We also illustrate the application of our SYMBOL -mixing generalization bounds to general classes of learning algorithms, including Support Vector Regression (SVR) CITATION , Kernel Ridge Regression CITATION , and Support Vector Machines (SVMs) CITATION
prediction
in 0.6418385, 0.3581615
we 0.6418385, 0.3581615
in1 0.8022363, 0.1977637
We 0.8022363, 0.1977637
those 0.4567429, 0.5432571
we1 0.4567429, 0.5432571
in2 0.8719526, 0.1280474
Section 0.8719526, 0.1280474
of 0.7316587, 0.2683413
our 0.7316587, 0.2683413
>
> # We can now get the explanations in the context of the input text
> plot_text_explanations(explanations)
Error: htmlwidgets is required for this functionality
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lime)
>
> test_check("lime")
Saving _problems/test-text-28.R
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-h2o.R:3:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-text.R:28:3'): single sentence explanation ───────────────────
Expected `explanation` to have length 13.
Actual length: 11.
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [54s/228s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lime)
>
> test_check("lime")
Saving _problems/test-text-28.R
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-h2o.R:3:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-text.R:28:3'): single sentence explanation ───────────────────
Expected `explanation` to have length 13.
Actual length: 11.
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [50s/229s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lime)
>
> test_check("lime")
Saving _problems/test-text-28.R
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-h2o.R:3:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-text.R:28:3'): single sentence explanation ───────────────────
Expected `explanation` to have length 13.
Actual length: 11.
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.5.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lime)
>
> test_check("lime")
Saving _problems/test-text-28.R
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-h2o.R:3:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-text.R:28:3'): single sentence explanation ───────────────────
Expected `explanation` to have length 13.
Actual length: 11.
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.5.3
Check: tests
Result: ERROR
Running 'testthat.R' [48s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(lime)
>
> test_check("lime")
Saving _problems/test-text-28.R
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-h2o.R:3:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-text.R:28:3'): single sentence explanation ───────────────────
Expected `explanation` to have length 13.
Actual length: 11.
[ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64