Last updated on 2026-02-03 09:54:19 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.44 | 819.21 | 857.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.86 | 544.19 | 568.05 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 70.00 | 1412.01 | 1482.01 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 67.00 | 1364.59 | 1431.59 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 40.00 | 578.00 | 618.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.83 | 752.54 | 806.37 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 35.82 | 732.80 | 768.62 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 537.00 | 576.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 125.00 | 133.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 756.00 | 781.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 666.00 | 720.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [116s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-03 20:30:09.032782: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.03309: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.036263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.042353: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.054681: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.054834: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.057217: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.06332: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.070499: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.070685: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.07524: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.090219: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.090601: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.096896: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.097033: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.101489: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.116644: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.11706: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.155389: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.155549: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.160479: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.194282: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.203942: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.204154: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.212945: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.291044: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.292306: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.323546: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.32367: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.325919: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.331377: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.337938: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.338084: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.342113: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.355785: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.356244: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.393317: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.393463: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.395822: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.402031: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.414475: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.414721: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.419465: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.434898: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.435324: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.455217: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.455351: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.458098: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.464219: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.490104: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.490325: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.495501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.510443: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.510912: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.531645: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.531784: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.534206: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.540224: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.552233: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.552475: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.557257: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.572118: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.572559: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.593044: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.593216: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.595674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.601855: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.616242: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.616471: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.620749: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.635939: embedding
> test_pipeop_isomap.R: 2026-02-03 20:30:09.636454: DONE
> test_pipeop_isomap.R: 2026-02-03 20:30:09.660205: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.660364: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.662718: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.669415: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.689479: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.68963: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.691943: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.698006: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 20:30:09.704233: Isomap START
> test_pipeop_isomap.R: 2026-02-03 20:30:09.704407: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 20:30:09.706654: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 20:30:09.712918: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [323s/444s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-03 00:02:57.452445: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:02:57.452987: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:57.477217: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:57.5289: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:02:57.633981: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:02:57.63428: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:57.651834: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:57.689366: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:02:57.741222: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:02:57.741703: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:57.787718: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:57.891301: embedding
> test_pipeop_isomap.R: 2026-02-03 00:02:57.892415: DONE
> test_pipeop_isomap.R: 2026-02-03 00:02:57.942032: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:02:57.942351: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:57.970955: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:58.083682: embedding
> test_pipeop_isomap.R: 2026-02-03 00:02:58.084771: DONE
> test_pipeop_isomap.R: 2026-02-03 00:02:58.242319: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:02:58.242618: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:58.290217: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:58.511524: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:02:58.591231: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:02:58.59167: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:58.680393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:59.190008: embedding
> test_pipeop_isomap.R: 2026-02-03 00:02:59.194202: DONE
> test_pipeop_isomap.R: 2026-02-03 00:02:59.483895: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:02:59.484193: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:59.508433: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:59.564723: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:02:59.615826: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:02:59.616289: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:02:59.658625: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:02:59.740998: embedding
> test_pipeop_isomap.R: 2026-02-03 00:02:59.761568: DONE
> test_pipeop_isomap.R: 2026-02-03 00:03:00.048145: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:03:00.048444: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:00.055163: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:00.100157: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:03:00.195101: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:03:00.195535: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:00.235066: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:00.335024: embedding
> test_pipeop_isomap.R: 2026-02-03 00:03:00.33613: DONE
> test_pipeop_isomap.R: 2026-02-03 00:03:00.474032: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:03:00.474352: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:00.481234: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:00.552509: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:03:00.652515: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:03:00.652963: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:00.837647: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:00.939702: embedding
> test_pipeop_isomap.R: 2026-02-03 00:03:00.940802: DONE
> test_pipeop_isomap.R: 2026-02-03 00:03:01.099492: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:03:01.099787: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:01.118457: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:01.166533: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:03:01.250696: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:03:01.251124: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:01.301932: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:01.395164: embedding
> test_pipeop_isomap.R: 2026-02-03 00:03:01.396362: DONE
> test_pipeop_isomap.R: 2026-02-03 00:03:01.541905: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:03:01.542196: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:01.5739: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:01.622001: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:03:01.699644: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 00:03:01.700106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:01.745481: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:01.849276: embedding
> test_pipeop_isomap.R: 2026-02-03 00:03:01.850452: DONE
> test_pipeop_isomap.R: 2026-02-03 00:03:02.012407: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:03:02.012705: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:02.019988: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:02.092801: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:03:02.271663: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:03:02.271952: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:02.278538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:02.351025: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 00:03:02.401797: Isomap START
> test_pipeop_isomap.R: 2026-02-03 00:03:02.402104: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 00:03:02.422921: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 00:03:02.468702: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [290s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-02 18:20:45.64582: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.646715: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:45.666308: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:45.69165: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:45.776208: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.776847: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:45.788593: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:45.812705: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:45.86572: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.86682: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:45.90679: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:45.953691: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:45.955383: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:45.995957: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.996575: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:46.014663: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:46.064058: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:46.066533: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:46.202191: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:46.202831: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:46.23373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:46.351303: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:46.409841: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:46.410738: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:46.462211: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:46.775262: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:46.781839: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:47.01977: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.020393: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.030535: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.052698: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:47.10506: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.105922: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.145216: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.195401: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:47.19721: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:47.408832: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.409563: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.420283: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.435212: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:47.498841: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.499476: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.531241: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.568698: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:47.569869: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:47.674924: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.67566: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.686429: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.708877: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:47.79501: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.796005: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.820068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.873638: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:48.35774: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:48.493555: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.494069: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.501242: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.516649: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:48.577365: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.578101: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.595811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.64719: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:48.648827: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:48.779485: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.780222: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.792399: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.815085: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:48.893156: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.894027: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.913458: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.970839: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:48.97284: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:49.117957: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:49.118582: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:49.130381: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:49.153134: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:49.263208: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:49.263683: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:49.272997: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:49.295783: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:49.335262: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:49.335931: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:49.368668: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:49.391091: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.400645')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64