CRAN Package Check Results for Package phylin

Last updated on 2026-04-09 09:54:03 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.2 2.63 487.73 490.36 NOTE
r-devel-linux-x86_64-debian-gcc 2.0.2 1.91 259.90 261.81 ERROR
r-devel-linux-x86_64-fedora-clang 2.0.2 806.12 OK
r-devel-linux-x86_64-fedora-gcc 2.0.2 964.51 OK
r-devel-macos-arm64 2.0.2 1.00 115.00 116.00 OK
r-devel-windows-x86_64 2.0.2 6.00 74.00 80.00 OK --no-vignettes
r-patched-linux-x86_64 2.0.2 2.58 468.59 471.17 OK
r-release-linux-x86_64 2.0.2 2.60 470.39 472.99 OK
r-release-macos-arm64 2.0.2 OK
r-release-macos-x86_64 2.0.2 2.00 504.00 506.00 OK
r-release-windows-x86_64 2.0.2 4.00 71.00 75.00 OK --no-vignettes
r-oldrel-macos-arm64 2.0.2 OK
r-oldrel-macos-x86_64 2.0.2 2.00 382.00 384.00 OK
r-oldrel-windows-x86_64 2.0.2 6.00 88.00 94.00 OK --no-vignettes

Check Details

Version: 2.0.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Pedro", family = "Tarroso", role = c("aut", "cre"), email = "ptarroso@cibio.up.pt"), person(given = "Guillermo", family = "Velo-Anton", role = "aut"), person(given = "Silvia", family = "Carvalho", role = "aut")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0.2
Check: examples
Result: ERROR Running examples in ‘phylin-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: extract.val > ### Title: Extact pairwise values from a matrix in a specified order. > ### Aliases: extract.val > ### Keywords: variogram kriging > > ### ** Examples > > > data(vipers) > data(d.gen) > > # calculate midpoints > mp <- midpoints(vipers[,1:2]) Error in midpoints(vipers[, 1:2]) : Package 'geometry' is needed for Delaunay triangulation. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘phylin_tutorial.Snw’ using Sweave Error: processing vignette 'phylin_tutorial.Snw' failed with diagnostics: chunk 31 (label = midpoints) Error in midpoints(vipers[, 1:2]) : Package 'geometry' is needed for Delaunay triangulation. --- failed re-building ‘phylin_tutorial.Snw’ --- re-building ‘resistance_tutorial.Snw’ using Sweave Loading required package: raster Loading required package: sp Loading required package: igraph Attaching package: ‘igraph’ The following object is masked from ‘package:raster’: union The following objects are masked from ‘package:stats’: decompose, spectrum The following object is masked from ‘package:base’: union Loading required package: Matrix Attaching package: ‘gdistance’ The following object is masked from ‘package:igraph’: normalize Warning in gen.variogram(geo.dist, simul.gen.dist, lag = 0.01) : The variogram contains NAs.Consider adjusting the lag. Warning in gen.variogram(res.dist, simul.gen.dist, lag = 120) : The variogram contains NAs.Consider adjusting the lag. --- finished re-building ‘resistance_tutorial.Snw’ SUMMARY: processing the following file failed: ‘phylin_tutorial.Snw’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc