Last updated on 2026-04-10 08:51:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2.1 | 22.24 | 301.09 | 323.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.2.1 | 14.71 | 206.84 | 221.55 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.2.1 | 37.00 | 451.77 | 488.77 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.2.1 | 36.00 | 433.37 | 469.37 | OK | |
| r-devel-macos-arm64 | 2.2.1 | 7.00 | 69.00 | 76.00 | OK | |
| r-devel-windows-x86_64 | 2.2.1 | 33.00 | 310.00 | 343.00 | OK | |
| r-patched-linux-x86_64 | 2.2.1 | 26.15 | 283.64 | 309.79 | OK | |
| r-release-linux-x86_64 | 2.2.1 | 14.25 | 273.95 | 288.20 | OK | |
| r-release-macos-arm64 | 2.2.1 | OK | ||||
| r-release-macos-x86_64 | 2.2.1 | 17.00 | 159.00 | 176.00 | OK | |
| r-release-windows-x86_64 | 2.2.1 | 30.00 | 294.00 | 324.00 | OK | |
| r-oldrel-macos-arm64 | 2.2.1 | OK | ||||
| r-oldrel-macos-x86_64 | 2.2.1 | 18.00 | 163.00 | 181.00 | OK | |
| r-oldrel-windows-x86_64 | 2.2.1 | 39.00 | 373.00 | 412.00 | OK |
Version: 2.2.1
Check: tests
Result: ERROR
Running ‘testthat.r’ [25s/29s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
> library(testthat)
> library(rbiom)
>
> test_check("rbiom")
Saving _problems/test-read_tree-4.R
[ FAIL 1 | WARN 0 | SKIP 32 | PASS 191 ]
══ Skipped tests (32) ══════════════════════════════════════════════════════════
• On CRAN (32): 'test-bdiv_heatmap.r:5:3', 'test-bdiv_ord_plot.r:6:3',
'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3', 'test-biom_ply.r:48:3',
'test-boxplot.r:10:3', 'test-boxplot_build.r:3:3', 'test-cache.r:3:3',
'test-convert.r:5:3', 'test-convert.r:24:3', 'test-convert.r:40:3',
'test-corrplot.r:11:3', 'test-distmat_ord_table.r:6:3',
'test-import_table.r:13:3', 'test-plot_heatmap.r:15:3',
'test-plot_palettes.r:6:3', 'test-rarefy.r:3:3',
'test-rbiom-deprecated.r:3:3', 'test-rbiom_objects.r:24:3',
'test-read_biom.r:3:3', 'test-read_fasta.r:3:3', 'test-s3_methods.r:3:3',
'test-stats_emmeans.r:8:3', 'test-stats_wilcox.r:3:3',
'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3', 'test-taxa_stacked.r:5:3',
'test-taxa_table.r:3:3', 'test-utils.r:3:3', 'test-validate.r:3:3',
'test-write_biom.r:15:3', 'test-write_xlsx.r:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-read_tree.r:4:3'): read_tree ───────────────────────────────────
Error in `if (all(tree$edge.length == 0)) tree$edge.length <- NULL`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─testthat::expect_s3_class(read_tree(tree), "phylo") at test-read_tree.r:4:3
2. │ └─testthat::quasi_label(enquo(object))
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─rbiom::read_tree(tree)
[ FAIL 1 | WARN 0 | SKIP 32 | PASS 191 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc