CRAN Package Check Results for Package sjSDM

Last updated on 2026-05-24 09:49:02 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.7 13.49 142.00 155.49 OK
r-devel-linux-x86_64-debian-gcc 1.0.7 9.91 107.99 117.90 OK
r-devel-linux-x86_64-fedora-clang 1.0.7 25.00 248.61 273.61 OK
r-devel-linux-x86_64-fedora-gcc 1.0.7 24.00 240.11 264.11 OK
r-devel-windows-x86_64 1.0.7 119.00 1046.00 1165.00 ERROR
r-patched-linux-x86_64 1.0.7 11.75 135.14 146.89 OK
r-release-linux-x86_64 1.0.7 14.16 140.06 154.22 OK
r-release-macos-arm64 1.0.7 4.00 42.00 46.00 OK
r-release-macos-x86_64 1.0.7 12.00 158.00 170.00 OK
r-release-windows-x86_64 1.0.7 85.00 1023.00 1108.00 ERROR
r-oldrel-macos-arm64 1.0.7 OK
r-oldrel-macos-x86_64 1.0.7 12.00 141.00 153.00 OK
r-oldrel-windows-x86_64 1.0.7 54.00 490.00 544.00 OK

Check Details

Version: 1.0.7
Check: whether the package can be loaded
Result: ERROR ── Attaching sjSDM ──────────────────────────────────────────────────── 1.0.7 ── Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning messages: 1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\RtmpEHYIu1\file23f434f81392c.bat' had status 1033 2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\RtmpEHYIu1\file23f4344527db3.bat' had status 1033 Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. ✖ torch ✔ torch_optimizer ✔ pyro ✔ madgrad Torch or other dependencies not found: 1. Use install_sjSDM() to install Pytorch and conda automatically 2. Installation trouble shooting guide: ?installation_help 3. If 1) and 2) did not help, please create an issue on <https://github.com/TheoreticalEcology/s-jSDM/issues> (see ?install_diagnostic) It looks like this package has a loading problem: see the messages for details. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: whether the package can be loaded with stated dependencies
Result: WARN ── Attaching sjSDM ──────────────────────────────────────────────────── 1.0.7 ── Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning messages: 1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\Rtmpg1EAhz\file21bd9453691bf9.bat' had status 1033 2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\Rtmpg1EAhz\file21bd9465305845.bat' had status 1033 Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. ✖ torch ✔ torch_optimizer ✔ pyro ✔ madgrad Torch or other dependencies not found: 1. Use install_sjSDM() to install Pytorch and conda automatically 2. Installation trouble shooting guide: ?installation_help 3. If 1) and 2) did not help, please create an issue on <https://github.com/TheoreticalEcology/s-jSDM/issues> (see ?install_diagnostic) It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See section 'The DESCRIPTION file' in the 'Writing R Extensions' manual. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: whether the package can be unloaded cleanly
Result: WARN ---- unloading Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.0.7
Check: whether the namespace can be loaded with stated dependencies
Result: WARN Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\Rtmpodd4Bp\file1978242a7b781d.bat' had status 1033 Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\Rtmpodd4Bp\file1978241f356765.bat' had status 1033 Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: whether the namespace can be unloaded cleanly
Result: WARN ---- unloading Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.0.7
Check: loading without being on the library search path
Result: WARN ── Attaching sjSDM ──────────────────────────────────────────────────── 1.0.7 ── Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning messages: 1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\RtmpQdi0bB\file1168d419f157e.bat' had status 1033 2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_22_01_50_00_13666\RtmpQdi0bB\file1168d4ec83126.bat' had status 1033 Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. ✖ torch ✔ torch_optimizer ✔ pyro ✔ madgrad Torch or other dependencies not found: 1. Use install_sjSDM() to install Pytorch and conda automatically 2. Installation trouble shooting guide: ?installation_help 3. If 1) and 2) did not help, please create an issue on <https://github.com/TheoreticalEcology/s-jSDM/issues> (see ?install_diagnostic) It looks like this package has a loading problem when not on .libPaths: see the messages for details. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: whether startup messages can be suppressed
Result: NOTE Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: dependencies in R code
Result: NOTE Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: S3 generic/method consistency
Result: WARN Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. See section 'Generic functions and methods' in the 'Writing R Extensions' manual. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: replacement functions
Result: WARN Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. The argument of a replacement function which corresponds to the right hand side must be named 'value'. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: foreign function calls
Result: NOTE Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. See chapter 'System and foreign language interfaces' in the 'Writing R Extensions' manual. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: R code for possible problems
Result: NOTE Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: for missing documentation entries
Result: WARN Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: for code/documentation mismatches
Result: WARN Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: Rd \usage sections
Result: NOTE Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Der Befehl "DOSKEY" ist entweder falsch geschrieben oder konnte nicht gefunden werden. The \usage entries for S3 methods should use the \method markup and not their full name. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: whether the package can be loaded
Result: ERROR ── Attaching sjSDM ──────────────────────────────────────────────────── 1.0.7 ── Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning messages: 1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpkTc819\file14f58859693352.bat' had status 1033 2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpkTc819\file14f5881ff92ed2.bat' had status 1033 Die eingegebene Zeile ist zu lang. Syntaxfehler. Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning message: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpkTc819\file14f58878091e8d.bat' had status 255 ✖ torch ✖ torch_optimizer ✖ pyro ✖ madgrad Torch or other dependencies not found: 1. Use install_sjSDM() to install Pytorch and conda automatically 2. Installation trouble shooting guide: ?installation_help 3. If 1) and 2) did not help, please create an issue on <https://github.com/TheoreticalEcology/s-jSDM/issues> (see ?install_diagnostic) It looks like this package has a loading problem: see the messages for details. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: whether the package can be loaded with stated dependencies
Result: WARN ── Attaching sjSDM ──────────────────────────────────────────────────── 1.0.7 ── Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning messages: 1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpqQUBJ6\file1c200c6a6956f0.bat' had status 1033 2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpqQUBJ6\file1c200cf157a24.bat' had status 1033 Die eingegebene Zeile ist zu lang. Syntaxfehler. Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning message: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpqQUBJ6\file1c200c186e115c.bat' had status 255 ✖ torch ✖ torch_optimizer ✖ pyro ✖ madgrad Torch or other dependencies not found: 1. Use install_sjSDM() to install Pytorch and conda automatically 2. Installation trouble shooting guide: ?installation_help 3. If 1) and 2) did not help, please create an issue on <https://github.com/TheoreticalEcology/s-jSDM/issues> (see ?install_diagnostic) It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See section 'The DESCRIPTION file' in the 'Writing R Extensions' manual. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: whether the namespace can be loaded with stated dependencies
Result: WARN Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpMdjvtp\file1ff4ac5b1e6635.bat' had status 1033 Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpMdjvtp\file1ff4ac1e00749c.bat' had status 1033 Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths Die eingegebene Zeile ist zu lang. Syntaxfehler. Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpMdjvtp\file1ff4ac1b3c7aae.bat' had status 255 Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: loading without being on the library search path
Result: WARN ── Attaching sjSDM ──────────────────────────────────────────────────── 1.0.7 ── Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning messages: 1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpMNlx1D\file122afc4f3a1c76.bat' had status 1033 2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpMNlx1D\file122afc32ee71.bat' had status 1033 Die eingegebene Zeile ist zu lang. Syntaxfehler. Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths In addition: Warning message: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, : running command 'C:\Windows\system32\cmd.exe /c D:\temp\2026_05_20_01_50_01_6433\RtmpMNlx1D\file122afc2d421d5.bat' had status 255 ✖ torch ✖ torch_optimizer ✖ pyro ✖ madgrad Torch or other dependencies not found: 1. Use install_sjSDM() to install Pytorch and conda automatically 2. Installation trouble shooting guide: ?installation_help 3. If 1) and 2) did not help, please create an issue on <https://github.com/TheoreticalEcology/s-jSDM/issues> (see ?install_diagnostic) It looks like this package has a loading problem when not on .libPaths: see the messages for details. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: whether startup messages can be suppressed
Result: NOTE Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths Die eingegebene Zeile ist zu lang. Syntaxfehler. Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: dependencies in R code
Result: NOTE Die eingegebene Zeile ist zu lang. Syntaxfehler. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: S3 generic/method consistency
Result: WARN Die eingegebene Zeile ist zu lang. Syntaxfehler. See section 'Generic functions and methods' in the 'Writing R Extensions' manual. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: replacement functions
Result: WARN Die eingegebene Zeile ist zu lang. Syntaxfehler. The argument of a replacement function which corresponds to the right hand side must be named 'value'. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: foreign function calls
Result: NOTE Die eingegebene Zeile ist zu lang. Syntaxfehler. See chapter 'System and foreign language interfaces' in the 'Writing R Extensions' manual. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: R code for possible problems
Result: NOTE Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths Die eingegebene Zeile ist zu lang. Syntaxfehler. Error in Sys.setenv(PATH = new_path) : 'names' and 'val' are of different lengths Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: for missing documentation entries
Result: WARN Die eingegebene Zeile ist zu lang. Syntaxfehler. All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: for code/documentation mismatches
Result: WARN Die eingegebene Zeile ist zu lang. Syntaxfehler. Die eingegebene Zeile ist zu lang. Syntaxfehler. Die eingegebene Zeile ist zu lang. Syntaxfehler. Flavor: r-release-windows-x86_64

Version: 1.0.7
Check: Rd \usage sections
Result: NOTE Die eingegebene Zeile ist zu lang. Syntaxfehler. The \usage entries for S3 methods should use the \method markup and not their full name. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. Flavor: r-release-windows-x86_64