CRAN Package Check Results for Package survxai

Last updated on 2021-08-01 08:52:55 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 12.40 326.91 339.31 OK
r-devel-linux-x86_64-debian-gcc 0.2.2 10.06 339.15 349.21 OK
r-devel-linux-x86_64-fedora-clang 0.2.2 380.56 OK
r-devel-linux-x86_64-fedora-gcc 0.2.2 368.54 OK
r-devel-windows-x86_64 0.2.2 27.00 332.00 359.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.2.2 OK
r-patched-linux-x86_64 0.2.2 OK
r-patched-solaris-x86 0.2.2 529.90 OK
r-release-linux-x86_64 0.2.2 11.60 301.18 312.78 OK
r-release-macos-arm64 0.2.2 WARN
r-release-macos-x86_64 0.2.2 OK
r-release-windows-ix86+x86_64 0.2.2 31.00 317.00 348.00 OK
r-oldrel-macos-x86_64 0.2.2 OK
r-oldrel-windows-ix86+x86_64 0.2.2 32.00 317.00 349.00 OK

Check Details

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Custom_predict_for_survival_models.Rmd’ using knitr
    Loading required package: Hmisc
    Loading required package: lattice
    Loading required package: survival
    
    Attaching package: 'survival'
    
    The following object is masked _by_ '.GlobalEnv':
    
     pbc
    
    Loading required package: Formula
    Loading required package: ggplot2
    
    Attaching package: 'Hmisc'
    
    The following objects are masked from 'package:base':
    
     format.pval, units
    
    Loading required package: SparseM
    
    Attaching package: 'SparseM'
    
    The following object is masked from 'package:base':
    
     backsolve
    
    Loading required package: prodlim
    Welcome to survxai (version: 0.2.2).
    Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
    
     randomForestSRC 2.12.0
    
     Type rfsrc.news() to see new features, changes, and bug fixes.
    
    
    
    Attaching package: 'randomForestSRC'
    
    The following object is masked from 'package:Hmisc':
    
     impute
    
    --- finished re-building ‘Custom_predict_for_survival_models.Rmd’
    
    --- re-building ‘Global_explanations.Rmd’ using knitr
    Loading required package: Hmisc
    Loading required package: lattice
    Loading required package: survival
    
    Attaching package: 'survival'
    
    The following object is masked _by_ '.GlobalEnv':
    
     pbc
    
    Loading required package: Formula
    Loading required package: ggplot2
    
    Attaching package: 'Hmisc'
    
    The following objects are masked from 'package:base':
    
     format.pval, units
    
    Loading required package: SparseM
    
    Attaching package: 'SparseM'
    
    The following object is masked from 'package:base':
    
     backsolve
    
    Loading required package: prodlim
    Welcome to survxai (version: 0.2.2).
    Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
    No covariates specified: Kaplan-Meier for censoring times used for weighting.
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     font "Helvetica" could not be found for family "sans"
    Quitting from lines 93-94 (Global_explanations.Rmd)
    Error: processing vignette 'Global_explanations.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘Global_explanations.Rmd’
    
    --- re-building ‘How_to_compare_models_with_survxai.Rmd’ using knitr
    Loading required package: Hmisc
    Loading required package: lattice
    Loading required package: survival
    
    Attaching package: 'survival'
    
    The following object is masked _by_ '.GlobalEnv':
    
     pbc
    
    Loading required package: Formula
    Loading required package: ggplot2
    
    Attaching package: 'Hmisc'
    
    The following objects are masked from 'package:base':
    
     format.pval, units
    
    Loading required package: SparseM
    
    Attaching package: 'SparseM'
    
    The following object is masked from 'package:base':
    
     backsolve
    
    
     randomForestSRC 2.12.0
    
     Type rfsrc.news() to see new features, changes, and bug fixes.
    
    
    
    Attaching package: 'randomForestSRC'
    
    The following object is masked from 'package:Hmisc':
    
     impute
    
    Loading required package: prodlim
    Welcome to survxai (version: 0.2.2).
    Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
    Package: CFC, Version: 1.1.2
    Cause-specific Framework for Competing-risk survival analysis
    School of Public Heath, Imperial College London &
    Davidson Kempner Capital Management, NY
    No covariates specified: Kaplan-Meier for censoring times used for weighting.
    No covariates specified: Kaplan-Meier for censoring times used for weighting.
    No covariates specified: Kaplan-Meier for censoring times used for weighting.
    No covariates specified: Kaplan-Meier for censoring times used for weighting.
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Scale for 'y' is already present. Adding another scale for 'y', which will
    replace the existing scale.
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     font "Helvetica" could not be found for family "sans"
    Quitting from lines 174-175 (How_to_compare_models_with_survxai.Rmd)
    Error: processing vignette 'How_to_compare_models_with_survxai.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘How_to_compare_models_with_survxai.Rmd’
    
    --- re-building ‘Local_explanations.Rmd’ using knitr
    Loading required package: Hmisc
    Loading required package: lattice
    Loading required package: survival
    
    Attaching package: 'survival'
    
    The following object is masked _by_ '.GlobalEnv':
    
     pbc
    
    Loading required package: Formula
    Loading required package: ggplot2
    
    Attaching package: 'Hmisc'
    
    The following objects are masked from 'package:base':
    
     format.pval, units
    
    Loading required package: SparseM
    
    Attaching package: 'SparseM'
    
    The following object is masked from 'package:base':
    
     backsolve
    
    Loading required package: prodlim
    Welcome to survxai (version: 0.2.2).
    Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     font "Helvetica" could not be found for family "sans"
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     font "Helvetica" could not be found for family "sans"
    Quitting from lines 108-109 (Local_explanations.Rmd)
    Error: processing vignette 'Local_explanations.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘Local_explanations.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘Global_explanations.Rmd’ ‘How_to_compare_models_with_survxai.Rmd’
     ‘Local_explanations.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64