General-purpose MCMC and SMC samplers, as well as plot and diagnostic functions for Bayesian statistics, with a particular focus on calibrating complex system models. Implemented samplers include various Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential Monte Carlo (SMC) particle filter.
Version: | 0.1.8 |
Depends: | R (≥ 3.1.2) |
Imports: | coda, emulator, mvtnorm, tmvtnorm, IDPmisc, Rcpp (≥ 0.12.12), ellipse, numDeriv, msm, MASS, Matrix, stats, utils, graphics, DHARMa, gap, bridgesampling |
LinkingTo: | Rcpp |
Suggests: | DEoptim, lhs, sensitivity, knitr, rmarkdown, roxygen2, testthat |
Published: | 2023-01-30 |
DOI: | 10.32614/CRAN.package.BayesianTools |
Author: | Florian Hartig |
Maintainer: | Florian Hartig <florian.hartig at biologie.uni-regensburg.de> |
BugReports: | https://github.com/florianhartig/BayesianTools/issues |
License: | GPL-3 |
URL: | https://github.com/florianhartig/BayesianTools |
NeedsCompilation: | yes |
Materials: | NEWS |
In views: | Bayesian |
CRAN checks: | BayesianTools results |
Reference manual: | BayesianTools.pdf |
Vignettes: |
Manual for the BayesianTools R package (source, R code) Interfacing your model with R (source, R code) |
Package source: | BayesianTools_0.1.8.tar.gz |
Windows binaries: | r-devel: BayesianTools_0.1.8.zip, r-release: BayesianTools_0.1.8.zip, r-oldrel: BayesianTools_0.1.8.zip |
macOS binaries: | r-devel (arm64): BayesianTools_0.1.8.tgz, r-release (arm64): BayesianTools_0.1.8.tgz, r-oldrel (arm64): BayesianTools_0.1.8.tgz, r-devel (x86_64): BayesianTools_0.1.8.tgz, r-release (x86_64): BayesianTools_0.1.8.tgz, r-oldrel (x86_64): BayesianTools_0.1.8.tgz |
Old sources: | BayesianTools archive |
Reverse imports: | DPTM, eDITH, rsofun |
Reverse suggests: | apsimx, ProfoundData, pttstability, r3PG |
Reverse enhances: | DHARMa |
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