BioUtils 0.0.1

Initial release

Features

• Load and parse GEO SOFT files (load.geo.soft)
• Extract expression, phenotype, and gene annotation data (extract.expression)
• Perform differential expression analysis using limma (run.limma.de)
• Visualize results with PCA and volcano plots
• Conduct single-gene statistical analysis (analyze.gene)
• Generate gene-level visualizations (gene.analysis.plot)
• Compute gene correlation matrices and heatmaps
• Perform Gene Set Enrichment Analysis (run.gsea)
• Fit LASSO models for multi-gene biomarker discovery (fit.lasso)

Documentation

• Added full pkgdown website
• Added case study vignette on renal cell carcinoma transcriptomics

BioUtils 0.1.1

Working release

Features

No features were changed

Documentation

• Added an additional vignette to show extensions upon the package particularly relating to visual analytics