MIC: Analysis of Antimicrobial Minimum Inhibitory Concentration Data
Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data. Validate the results of an MIC experiment by comparing observed MIC values to a gold standard assay, in line with standards from the International Organization for Standardization (2021) <https://www.iso.org/standard/79377.html>. Perform MIC prediction from whole genome sequence data stored in the Pathosystems Resource Integration Center (2013) <doi:10.1093/nar/gkt1099> database or locally.
| Version: | 1.0.2 |
| Depends: | R (≥ 4.1.0) |
| Imports: | AMR, glue, readr, dplyr, Rcpp, data.table, Biostrings, stringr, rlang, tidyr, future.apply, progressr, lemon, ggplot2, forcats, purrr, tibble |
| LinkingTo: | Rcpp |
| Suggests: | testthat (≥ 3.0.0), xgboost, flextable, caret, lifecycle, future |
| Published: | 2025-02-07 |
| DOI: | 10.32614/CRAN.package.MIC |
| Author: | Alessandro Gerada 
[aut, cre, cph] |
| Maintainer: | Alessandro Gerada <alessandro.gerada at liverpool.ac.uk> |
| BugReports: | https://github.com/agerada/MIC/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/agerada/MIC |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | MIC results |
Documentation:
| Reference manual: | MIC.pdf |
Downloads:
| Package source: | MIC_1.0.2.tar.gz |
| Windows binaries: | r-devel: MIC_1.0.2.zip, r-release: MIC_1.0.2.zip, r-oldrel: MIC_1.0.2.zip |
| macOS binaries: | r-devel (arm64): MIC_1.0.2.tgz, r-release (arm64): MIC_1.0.2.tgz, r-oldrel (arm64): not available, r-devel (x86_64): MIC_1.0.2.tgz, r-release (x86_64): MIC_1.0.2.tgz, r-oldrel (x86_64): MIC_1.0.2.tgz |
Linking:
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