MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny

Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.

Version: 1.3
Depends: ape, phytools, phangorn, RColorBrewer, taxize
Suggests: knitr, testthat, paleotree, rmarkdown
Published: 2021-02-17
Author: Orlando Schwery [aut, cre], Brian C. O'Meara [aut, ctb], Peter Cowman [ctb]
Maintainer: Orlando Schwery <oschwery at vols.utk.edu>
License: GPL-3
NeedsCompilation: no
Citation: MonoPhy citation info
CRAN checks: MonoPhy results

Downloads:

Reference manual: MonoPhy.pdf
Vignettes: MonoPhy Tutorial
Package source: MonoPhy_1.3.tar.gz
Windows binaries: r-devel: MonoPhy_1.3.zip, r-release: MonoPhy_1.3.zip, r-oldrel: not available
macOS binaries: r-release: MonoPhy_1.3.tgz, r-oldrel: not available
Old sources: MonoPhy archive

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