SIPmg: Statistical Analysis to Identify Isotope Incorporating MAGs

Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs). Helpful reading and a vignette in bookdown format is provided on the package site <https://zielslab.github.io/SIPmg.github.io/>.

Version: 1.4.1
Depends: R (≥ 3.5.0)
Imports: HTSSIP, dplyr, lazyeval, phyloseq, plyr, stringr, tibble, tidyr, magrittr, ggplot2, ggpubr, purrr, rlang, MASS, DESeq2, data.table, utils
Suggests: rmarkdown, knitr, EBImage, readr, BiocManager
Published: 2023-02-22
Author: Pranav Sampara [aut, cre], Kate Waring [ctb], Ryan Ziels [aut]
Maintainer: Pranav Sampara <pranav.sai.4 at gmail.com>
BugReports: https://github.com/ZielsLab/SIPmg
License: GPL-2
URL: https://zielslab.github.io/SIPmg.github.io/
NeedsCompilation: yes
CRAN checks: SIPmg results

Documentation:

Reference manual: SIPmg.pdf
Vignettes: SIPmg-vignette

Downloads:

Package source: SIPmg_1.4.1.tar.gz
Windows binaries: r-devel: SIPmg_1.4.1.zip, r-release: SIPmg_1.4.1.zip, r-oldrel: SIPmg_1.4.1.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): SIPmg_1.4.1.tgz, r-release (x86_64): not available
Old sources: SIPmg archive

Linking:

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