SeqFeatR Version 0.3.1 ====================== Changes: - getfreqs now working with only one feature SeqFeatR Version 0.3 ====================== Changes: - HLA input can now be 4 letter coded - HLA input can now include a third definition for HLA (C) SeqFeatR Version 0.2.7 ====================== Changes: - wrong package Rd removed SeqFeatR Version 0.2.6 ====================== Changes: - no loop is visible corrected SeqFeatR Version 0.2.5 ====================== Changes: - Own citation corrected (escaped characters) SeqFeatR Version 0.2.4 ====================== Changes: - Own citation added SeqFeatR Version 0.2.3 ====================== Changes: - small change because of new function in package ape with same name as function in Biostrings SeqFeatR Version 0.2.2 ====================== Changes: - new function! smallmanhattan produces small versions of the manhattan plot from assocpoint - correction of OR values in assocpoint function SeqFeatR Version 0.2.1 ====================== Changes: - phylo bias new SeqFeatR Version 0.2.0 ====================== Changes: - Bayes Factor for association - Hierarchical Bayes for association as extra function which uses R2jags and JAGS. JAGS has to be installed if you want to run assocpointhierarchical. SeqFeatR Version 0.1.7 ====================== Changes: - new functionality! Get frequencies for epitope positions - graphical results from assocpoint can be with or without possible epitope plot - updated man-pages SeqFeatR Version 0.1.6 ====================== Changes: - GUI updates - possibility to use Bayes as correction for assocpoint - OR Plot can be p-values or odds ratios now - new plot! volcano plot for feature association results