epizootic: Spatially Explicit Population Models of Disease Transmission in
Wildlife
This extension of the pattern-oriented modeling framework of the
'poems' package provides a collection of modules and functions customized
for modeling disease transmission on a population scale in a spatiotemporally
explicit manner. This includes seasonal time steps, dispersal functions that
track disease state of dispersers, results objects that store disease states,
and a population simulator that includes disease dynamics.
| Version: |
1.0.0 |
| Depends: |
R (≥ 4.3.0) |
| Imports: |
purrr (≥ 1.0.0), dplyr (≥ 1.1.3), tibble (≥ 3.2.1), R6 (≥
2.5.1), cli (≥ 3.6.1), raster (≥ 3.6), qs (≥ 0.25.7), poems (≥ 1.1.0), doParallel (≥ 1.0.16), foreach (≥ 1.5.1), Rcpp |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
testthat (≥ 3.0.0), geosphere (≥ 1.5), knitr (≥ 1.17), rmarkdown (≥ 1.6) |
| Published: |
2024-10-02 |
| DOI: |
10.32614/CRAN.package.epizootic |
| Author: |
July Pilowsky 
[aut, cre],
National Science Foundation Biology Integration Institute 2213854 [fnd] |
| Maintainer: |
July Pilowsky <pilowskyj at caryinstitute.org> |
| BugReports: |
https://github.com/viralemergence/epizootic/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/viralemergence/epizootic |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| CRAN checks: |
epizootic results |
Documentation:
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